miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23357 3' -58.4 NC_005259.1 + 27389 0.68 0.498153
Target:  5'- aCCgGCGGCGgugucGGCAGcggcgGCAgCUCGGugCc -3'
miRNA:   3'- -GG-CGUCGC-----CCGUCa----UGUgGAGCCugG- -5'
23357 3' -58.4 NC_005259.1 + 27916 0.69 0.440663
Target:  5'- aCCGC-GCGGGUGGUaGCGgUUCGGcgACCc -3'
miRNA:   3'- -GGCGuCGCCCGUCA-UGUgGAGCC--UGG- -5'
23357 3' -58.4 NC_005259.1 + 28073 0.68 0.517058
Target:  5'- gCCGCcacacGGUGGG--GUGCACCUCgaagugcagauguGGGCCg -3'
miRNA:   3'- -GGCG-----UCGCCCguCAUGUGGAG-------------CCUGG- -5'
23357 3' -58.4 NC_005259.1 + 28359 0.74 0.241753
Target:  5'- aCGguGCuGGCuGcccCACCUCGGGCCg -3'
miRNA:   3'- gGCguCGcCCGuCau-GUGGAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 29119 0.68 0.538278
Target:  5'- cCUGCuggugAGCGcGGCGGUAUucGCCUCGcucACCg -3'
miRNA:   3'- -GGCG-----UCGC-CCGUCAUG--UGGAGCc--UGG- -5'
23357 3' -58.4 NC_005259.1 + 29965 0.73 0.27993
Target:  5'- gUGgGGCGGGCGGUG-ACCguccaaCGGACCc -3'
miRNA:   3'- gGCgUCGCCCGUCAUgUGGa-----GCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 31936 0.67 0.579452
Target:  5'- cUCGgGGuCGaGGCGGU-UACCUCGGguGCCu -3'
miRNA:   3'- -GGCgUC-GC-CCGUCAuGUGGAGCC--UGG- -5'
23357 3' -58.4 NC_005259.1 + 32512 0.66 0.631746
Target:  5'- aCCGUgagguagucgaGGCGGGCGGcaggcUugACCUUGcuguuGGCCg -3'
miRNA:   3'- -GGCG-----------UCGCCCGUC-----AugUGGAGC-----CUGG- -5'
23357 3' -58.4 NC_005259.1 + 34908 0.68 0.538278
Target:  5'- gCCGCu-CGGGCAucacacUGCuGCCUCGGGCg -3'
miRNA:   3'- -GGCGucGCCCGUc-----AUG-UGGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 40456 0.66 0.642239
Target:  5'- gCCGguGUGGuuGacGUACugC-CGGGCCg -3'
miRNA:   3'- -GGCguCGCCcgU--CAUGugGaGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 41502 0.66 0.66319
Target:  5'- gCgGUGGCGGGCAG---ACCgUGGAUCu -3'
miRNA:   3'- -GgCGUCGCCCGUCaugUGGaGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 41724 0.7 0.395755
Target:  5'- aCCgGCGGCGGGgAGgacacCGCCUCGacacgcucGACCu -3'
miRNA:   3'- -GG-CGUCGCCCgUCau---GUGGAGC--------CUGG- -5'
23357 3' -58.4 NC_005259.1 + 41880 0.68 0.528134
Target:  5'- aCCGUGGCGGGCcGaUACGCaugCGGGa- -3'
miRNA:   3'- -GGCGUCGCCCGuC-AUGUGga-GCCUgg -5'
23357 3' -58.4 NC_005259.1 + 44950 0.73 0.260271
Target:  5'- aC-CAGCGGGCAGUGCggucaucgggauGCCgaGGGCCg -3'
miRNA:   3'- gGcGUCGCCCGUCAUG------------UGGagCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 45626 0.67 0.600303
Target:  5'- cCCGCcgGGcCGGGCAGcGCGCC--GGugCc -3'
miRNA:   3'- -GGCG--UC-GCCCGUCaUGUGGagCCugG- -5'
23357 3' -58.4 NC_005259.1 + 46400 0.67 0.594035
Target:  5'- gCGCGGUgagggcaucgaaaccGGGCuGUGCACC-CGuGACg -3'
miRNA:   3'- gGCGUCG---------------CCCGuCAUGUGGaGC-CUGg -5'
23357 3' -58.4 NC_005259.1 + 47171 0.68 0.528134
Target:  5'- aCCGUAGCGgcgaaggucGGCGGUGC-CgUCGGcgaagaacuuGCCg -3'
miRNA:   3'- -GGCGUCGC---------CCGUCAUGuGgAGCC----------UGG- -5'
23357 3' -58.4 NC_005259.1 + 49584 0.74 0.230027
Target:  5'- aC-CGGCGGGCGGggucaGCACCUC-GACCu -3'
miRNA:   3'- gGcGUCGCCCGUCa----UGUGGAGcCUGG- -5'
23357 3' -58.4 NC_005259.1 + 50058 0.66 0.642239
Target:  5'- cCCGCAcGCgaaacGGGguGUAgACCUgCGGcagcucGCCg -3'
miRNA:   3'- -GGCGU-CG-----CCCguCAUgUGGA-GCC------UGG- -5'
23357 3' -58.4 NC_005259.1 + 50752 0.7 0.431449
Target:  5'- gCCGCcacGCGGuGuCGGacgACACCUCGG-CCu -3'
miRNA:   3'- -GGCGu--CGCC-C-GUCa--UGUGGAGCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.