miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23357 3' -58.4 NC_005259.1 + 774 0.68 0.53726
Target:  5'- aCCGCGcCGaGGCGGcUGC-CCUCGGuugggugGCCa -3'
miRNA:   3'- -GGCGUcGC-CCGUC-AUGuGGAGCC-------UGG- -5'
23357 3' -58.4 NC_005259.1 + 2039 0.7 0.387133
Target:  5'- gUGCGGUGGGCGGU-CACC--GGcACCg -3'
miRNA:   3'- gGCGUCGCCCGUCAuGUGGagCC-UGG- -5'
23357 3' -58.4 NC_005259.1 + 3093 0.69 0.440663
Target:  5'- gCCGCgcagcgaugAGCGGGCGGccauugcgcgGCACCgugggcagCGGACg -3'
miRNA:   3'- -GGCG---------UCGCCCGUCa---------UGUGGa-------GCCUGg -5'
23357 3' -58.4 NC_005259.1 + 4655 0.69 0.449988
Target:  5'- aCCGCGccuaCGGGCacGGUgucuGCACuggCUCGGGCCg -3'
miRNA:   3'- -GGCGUc---GCCCG--UCA----UGUG---GAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 6566 0.75 0.19272
Target:  5'- gCGCGGCGuGuCAGgcCGCCUCGGACa -3'
miRNA:   3'- gGCGUCGCcC-GUCauGUGGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 9700 0.68 0.518061
Target:  5'- gCCGCucacUGGGCAccgu-CCUCGGGCCg -3'
miRNA:   3'- -GGCGuc--GCCCGUcauguGGAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 10348 0.68 0.498153
Target:  5'- gCgGCAGCGGGCucgACA--UCGGGCUc -3'
miRNA:   3'- -GgCGUCGCCCGucaUGUggAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 11140 0.72 0.315284
Target:  5'- gUCGCcuGCGGGUA--ACACUUCGGugCg -3'
miRNA:   3'- -GGCGu-CGCCCGUcaUGUGGAGCCugG- -5'
23357 3' -58.4 NC_005259.1 + 13207 0.67 0.579452
Target:  5'- gCaCAGCGGggccaGCGGUGgGCCUC-GACCg -3'
miRNA:   3'- gGcGUCGCC-----CGUCAUgUGGAGcCUGG- -5'
23357 3' -58.4 NC_005259.1 + 13312 0.67 0.589861
Target:  5'- gUGCGGCGGG--GUAUAUCUUGGuaACCc -3'
miRNA:   3'- gGCGUCGCCCguCAUGUGGAGCC--UGG- -5'
23357 3' -58.4 NC_005259.1 + 15098 0.74 0.224345
Target:  5'- gCGCcGCaGGGCcaucgAGUGgACCUUGGACCa -3'
miRNA:   3'- gGCGuCG-CCCG-----UCAUgUGGAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 18779 0.66 0.652723
Target:  5'- aUCGCGGUGGGCaagcGGUggcagggacgccGCACCcUCaaGACCa -3'
miRNA:   3'- -GGCGUCGCCCG----UCA------------UGUGG-AGc-CUGG- -5'
23357 3' -58.4 NC_005259.1 + 20333 0.67 0.569082
Target:  5'- aCGUgcacgaccuauGGCGGGCGGUACuacgcguccACCUCGugcGACg -3'
miRNA:   3'- gGCG-----------UCGCCCGUCAUG---------UGGAGC---CUGg -5'
23357 3' -58.4 NC_005259.1 + 20542 0.68 0.518061
Target:  5'- cCCGCAGCGuGGUGGaucaGCACCgacccCGaGAUCa -3'
miRNA:   3'- -GGCGUCGC-CCGUCa---UGUGGa----GC-CUGG- -5'
23357 3' -58.4 NC_005259.1 + 23613 0.66 0.652723
Target:  5'- cCCGCguGGC-GGCAGccagACGgCUCGGugUg -3'
miRNA:   3'- -GGCG--UCGcCCGUCa---UGUgGAGCCugG- -5'
23357 3' -58.4 NC_005259.1 + 24793 0.66 0.642239
Target:  5'- gCGCAGCaGGGCcaagaccgaGGUGC-CC-CGGcacGCCg -3'
miRNA:   3'- gGCGUCG-CCCG---------UCAUGuGGaGCC---UGG- -5'
23357 3' -58.4 NC_005259.1 + 25766 0.74 0.230027
Target:  5'- aCCGCuauGCGGGCAGcucucgcccUACccaAUCUCGGACg -3'
miRNA:   3'- -GGCGu--CGCCCGUC---------AUG---UGGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 26438 0.74 0.2478
Target:  5'- aCCGCcgAGCGGGCGG---GCCggUGGGCCg -3'
miRNA:   3'- -GGCG--UCGCCCGUCaugUGGa-GCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 26823 0.71 0.369436
Target:  5'- aCCgGCGGUggugccgGGGCGGU-CugCUCGGGCa -3'
miRNA:   3'- -GG-CGUCG-------CCCGUCAuGugGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 27105 0.67 0.558758
Target:  5'- aUGCGGUGGGCuGUGuCAUg-CGGAUCu -3'
miRNA:   3'- gGCGUCGCCCGuCAU-GUGgaGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.