Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 6566 | 0.75 | 0.19272 |
Target: 5'- gCGCGGCGuGuCAGgcCGCCUCGGACa -3' miRNA: 3'- gGCGUCGCcC-GUCauGUGGAGCCUGg -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 15098 | 0.74 | 0.224345 |
Target: 5'- gCGCcGCaGGGCcaucgAGUGgACCUUGGACCa -3' miRNA: 3'- gGCGuCG-CCCG-----UCAUgUGGAGCCUGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 25766 | 0.74 | 0.230027 |
Target: 5'- aCCGCuauGCGGGCAGcucucgcccUACccaAUCUCGGACg -3' miRNA: 3'- -GGCGu--CGCCCGUC---------AUG---UGGAGCCUGg -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 49584 | 0.74 | 0.230027 |
Target: 5'- aC-CGGCGGGCGGggucaGCACCUC-GACCu -3' miRNA: 3'- gGcGUCGCCCGUCa----UGUGGAGcCUGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 28359 | 0.74 | 0.241753 |
Target: 5'- aCGguGCuGGCuGcccCACCUCGGGCCg -3' miRNA: 3'- gGCguCGcCCGuCau-GUGGAGCCUGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 26438 | 0.74 | 0.2478 |
Target: 5'- aCCGCcgAGCGGGCGG---GCCggUGGGCCg -3' miRNA: 3'- -GGCG--UCGCCCGUCaugUGGa-GCCUGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 44950 | 0.73 | 0.260271 |
Target: 5'- aC-CAGCGGGCAGUGCggucaucgggauGCCgaGGGCCg -3' miRNA: 3'- gGcGUCGCCCGUCAUG------------UGGagCCUGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 29965 | 0.73 | 0.27993 |
Target: 5'- gUGgGGCGGGCGGUG-ACCguccaaCGGACCc -3' miRNA: 3'- gGCgUCGCCCGUCAUgUGGa-----GCCUGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 58771 | 0.72 | 0.307952 |
Target: 5'- aCGCuGCGGGCGcuGUGCGCCggUCGaGGCg -3' miRNA: 3'- gGCGuCGCCCGU--CAUGUGG--AGC-CUGg -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 11140 | 0.72 | 0.315284 |
Target: 5'- gUCGCcuGCGGGUA--ACACUUCGGugCg -3' miRNA: 3'- -GGCGu-CGCCCGUcaUGUGGAGCCugG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 61830 | 0.72 | 0.315284 |
Target: 5'- -aGCAGCauguugcugccaGGGguGaGCACCUCGG-CCa -3' miRNA: 3'- ggCGUCG------------CCCguCaUGUGGAGCCuGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 52373 | 0.72 | 0.322747 |
Target: 5'- gCCGacucaAGCGGcugcGCAGccUGCCUCGGGCCa -3' miRNA: 3'- -GGCg----UCGCC----CGUCauGUGGAGCCUGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 64757 | 0.71 | 0.345922 |
Target: 5'- aCCGCGccucGCGa-CGGUGCGCCUCGGcgGCCc -3' miRNA: 3'- -GGCGU----CGCccGUCAUGUGGAGCC--UGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 58808 | 0.71 | 0.362022 |
Target: 5'- gCCuCGGCGGGCucgcGCugCUCGGcACCc -3' miRNA: 3'- -GGcGUCGCCCGuca-UGugGAGCC-UGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 26823 | 0.71 | 0.369436 |
Target: 5'- aCCgGCGGUggugccgGGGCGGU-CugCUCGGGCa -3' miRNA: 3'- -GG-CGUCG-------CCCGUCAuGugGAGCCUGg -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 2039 | 0.7 | 0.387133 |
Target: 5'- gUGCGGUGGGCGGU-CACC--GGcACCg -3' miRNA: 3'- gGCGUCGCCCGUCAuGUGGagCC-UGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 41724 | 0.7 | 0.395755 |
Target: 5'- aCCgGCGGCGGGgAGgacacCGCCUCGacacgcucGACCu -3' miRNA: 3'- -GG-CGUCGCCCgUCau---GUGGAGC--------CUGG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 54586 | 0.7 | 0.420542 |
Target: 5'- gUCGCGGUGGGCAaUGCugagcuggucauUCUCGGugCu -3' miRNA: 3'- -GGCGUCGCCCGUcAUGu-----------GGAGCCugG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 68699 | 0.7 | 0.422349 |
Target: 5'- aUCGaGGCGGGCA--GCGCgUCGGugCc -3' miRNA: 3'- -GGCgUCGCCCGUcaUGUGgAGCCugG- -5' |
|||||||
23357 | 3' | -58.4 | NC_005259.1 | + | 50752 | 0.7 | 0.431449 |
Target: 5'- gCCGCcacGCGGuGuCGGacgACACCUCGG-CCu -3' miRNA: 3'- -GGCGu--CGCC-C-GUCa--UGUGGAGCCuGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home