miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23357 3' -58.4 NC_005259.1 + 66600 0.66 0.66319
Target:  5'- gCCGCAuccaugcagguGgGGGCGGUAUuUCUCGucccuGGCCa -3'
miRNA:   3'- -GGCGU-----------CgCCCGUCAUGuGGAGC-----CUGG- -5'
23357 3' -58.4 NC_005259.1 + 64757 0.71 0.345922
Target:  5'- aCCGCGccucGCGa-CGGUGCGCCUCGGcgGCCc -3'
miRNA:   3'- -GGCGU----CGCccGUCAUGUGGAGCC--UGG- -5'
23357 3' -58.4 NC_005259.1 + 58808 0.71 0.362022
Target:  5'- gCCuCGGCGGGCucgcGCugCUCGGcACCc -3'
miRNA:   3'- -GGcGUCGCCCGuca-UGugGAGCC-UGG- -5'
23357 3' -58.4 NC_005259.1 + 26823 0.71 0.369436
Target:  5'- aCCgGCGGUggugccgGGGCGGU-CugCUCGGGCa -3'
miRNA:   3'- -GG-CGUCG-------CCCGUCAuGugGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 2039 0.7 0.387133
Target:  5'- gUGCGGUGGGCGGU-CACC--GGcACCg -3'
miRNA:   3'- gGCGUCGCCCGUCAuGUGGagCC-UGG- -5'
23357 3' -58.4 NC_005259.1 + 41724 0.7 0.395755
Target:  5'- aCCgGCGGCGGGgAGgacacCGCCUCGacacgcucGACCu -3'
miRNA:   3'- -GG-CGUCGCCCgUCau---GUGGAGC--------CUGG- -5'
23357 3' -58.4 NC_005259.1 + 54586 0.7 0.420542
Target:  5'- gUCGCGGUGGGCAaUGCugagcuggucauUCUCGGugCu -3'
miRNA:   3'- -GGCGUCGCCCGUcAUGu-----------GGAGCCugG- -5'
23357 3' -58.4 NC_005259.1 + 68699 0.7 0.422349
Target:  5'- aUCGaGGCGGGCA--GCGCgUCGGugCc -3'
miRNA:   3'- -GGCgUCGCCCGUcaUGUGgAGCCugG- -5'
23357 3' -58.4 NC_005259.1 + 50752 0.7 0.431449
Target:  5'- gCCGCcacGCGGuGuCGGacgACACCUCGG-CCu -3'
miRNA:   3'- -GGCGu--CGCC-C-GUCa--UGUGGAGCCuGG- -5'
23357 3' -58.4 NC_005259.1 + 52373 0.72 0.322747
Target:  5'- gCCGacucaAGCGGcugcGCAGccUGCCUCGGGCCa -3'
miRNA:   3'- -GGCg----UCGCC----CGUCauGUGGAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 11140 0.72 0.315284
Target:  5'- gUCGCcuGCGGGUA--ACACUUCGGugCg -3'
miRNA:   3'- -GGCGu-CGCCCGUcaUGUGGAGCCugG- -5'
23357 3' -58.4 NC_005259.1 + 61830 0.72 0.315284
Target:  5'- -aGCAGCauguugcugccaGGGguGaGCACCUCGG-CCa -3'
miRNA:   3'- ggCGUCG------------CCCguCaUGUGGAGCCuGG- -5'
23357 3' -58.4 NC_005259.1 + 15098 0.74 0.224345
Target:  5'- gCGCcGCaGGGCcaucgAGUGgACCUUGGACCa -3'
miRNA:   3'- gGCGuCG-CCCG-----UCAUgUGGAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 25766 0.74 0.230027
Target:  5'- aCCGCuauGCGGGCAGcucucgcccUACccaAUCUCGGACg -3'
miRNA:   3'- -GGCGu--CGCCCGUC---------AUG---UGGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 49584 0.74 0.230027
Target:  5'- aC-CGGCGGGCGGggucaGCACCUC-GACCu -3'
miRNA:   3'- gGcGUCGCCCGUCa----UGUGGAGcCUGG- -5'
23357 3' -58.4 NC_005259.1 + 28359 0.74 0.241753
Target:  5'- aCGguGCuGGCuGcccCACCUCGGGCCg -3'
miRNA:   3'- gGCguCGcCCGuCau-GUGGAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 26438 0.74 0.2478
Target:  5'- aCCGCcgAGCGGGCGG---GCCggUGGGCCg -3'
miRNA:   3'- -GGCG--UCGCCCGUCaugUGGa-GCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 44950 0.73 0.260271
Target:  5'- aC-CAGCGGGCAGUGCggucaucgggauGCCgaGGGCCg -3'
miRNA:   3'- gGcGUCGCCCGUCAUG------------UGGagCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 29965 0.73 0.27993
Target:  5'- gUGgGGCGGGCGGUG-ACCguccaaCGGACCc -3'
miRNA:   3'- gGCgUCGCCCGUCAUgUGGa-----GCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 58771 0.72 0.307952
Target:  5'- aCGCuGCGGGCGcuGUGCGCCggUCGaGGCg -3'
miRNA:   3'- gGCGuCGCCCGU--CAUGUGG--AGC-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.