miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23358 3' -60.4 NC_005259.1 + 61859 0.66 0.550559
Target:  5'- -cUCGGcCACCGCcuCGCgUGCCGcguGAUCa -3'
miRNA:   3'- ccAGCCuGUGGCGc-GCG-ACGGC---CUAG- -5'
23358 3' -60.4 NC_005259.1 + 16485 0.66 0.54042
Target:  5'- cGUCaaGGGCGcacCCGCGCGCaugGCCGaGAg- -3'
miRNA:   3'- cCAG--CCUGU---GGCGCGCGa--CGGC-CUag -5'
23358 3' -60.4 NC_005259.1 + 41641 0.66 0.530344
Target:  5'- cGGUgcCGGuCugCGgGCGCUcggugaGCgGGAUCu -3'
miRNA:   3'- -CCA--GCCuGugGCgCGCGA------CGgCCUAG- -5'
23358 3' -60.4 NC_005259.1 + 36423 0.66 0.530344
Target:  5'- gGGUCauGGuCugCGCaGCGUcGCCGaGGUCg -3'
miRNA:   3'- -CCAG--CCuGugGCG-CGCGaCGGC-CUAG- -5'
23358 3' -60.4 NC_005259.1 + 56812 0.66 0.519341
Target:  5'- gGGUCGGugGCCacccauuGCGCGCcuaUG-UGGAUg -3'
miRNA:   3'- -CCAGCCugUGG-------CGCGCG---ACgGCCUAg -5'
23358 3' -60.4 NC_005259.1 + 45528 0.66 0.500555
Target:  5'- uGUUGGcCGCCGUG-GCUGCgagCGGGUUg -3'
miRNA:   3'- cCAGCCuGUGGCGCgCGACG---GCCUAG- -5'
23358 3' -60.4 NC_005259.1 + 56659 0.67 0.490788
Target:  5'- ---aGGGCACCGCGCGUca-CGGGcUCg -3'
miRNA:   3'- ccagCCUGUGGCGCGCGacgGCCU-AG- -5'
23358 3' -60.4 NC_005259.1 + 17761 0.67 0.490788
Target:  5'- ---aGGcCGCCGCGCGCcggGCCGaGcgCa -3'
miRNA:   3'- ccagCCuGUGGCGCGCGa--CGGC-CuaG- -5'
23358 3' -60.4 NC_005259.1 + 62930 0.67 0.481111
Target:  5'- -cUCGGuuuGCGgcUCGCGCuGCUGCCGGGc- -3'
miRNA:   3'- ccAGCC---UGU--GGCGCG-CGACGGCCUag -5'
23358 3' -60.4 NC_005259.1 + 34255 0.67 0.481111
Target:  5'- uGUCcGACACauCGgGCUcaGCCGGAUCg -3'
miRNA:   3'- cCAGcCUGUGgcGCgCGA--CGGCCUAG- -5'
23358 3' -60.4 NC_005259.1 + 51675 0.67 0.478226
Target:  5'- cGUCGGGCACgGgCGCGCgauggucucauaggUGCCGaacuGUCg -3'
miRNA:   3'- cCAGCCUGUGgC-GCGCG--------------ACGGCc---UAG- -5'
23358 3' -60.4 NC_005259.1 + 22144 0.67 0.471528
Target:  5'- cGUCGG-CAUCGUGCGC-GCCgaaauGGAUg -3'
miRNA:   3'- cCAGCCuGUGGCGCGCGaCGG-----CCUAg -5'
23358 3' -60.4 NC_005259.1 + 64397 0.67 0.457337
Target:  5'- gGGUCGGugAugagcugcgaugcagCCGUGagggaucgccgacgaGCUGCCGGggCg -3'
miRNA:   3'- -CCAGCCugU---------------GGCGCg--------------CGACGGCCuaG- -5'
23358 3' -60.4 NC_005259.1 + 45419 0.67 0.452657
Target:  5'- --aUGGcCGCCGC-CGCUgccucguagGCCGGAUCu -3'
miRNA:   3'- ccaGCCuGUGGCGcGCGA---------CGGCCUAG- -5'
23358 3' -60.4 NC_005259.1 + 56098 0.67 0.442456
Target:  5'- cGUCGGGgccaccgcguggcCACCgaaacuguGUGCGCUGCCGGu-- -3'
miRNA:   3'- cCAGCCU-------------GUGG--------CGCGCGACGGCCuag -5'
23358 3' -60.4 NC_005259.1 + 12217 0.68 0.425146
Target:  5'- --cCGGcGCACCGCcCGCUGgCCGGGc- -3'
miRNA:   3'- ccaGCC-UGUGGCGcGCGAC-GGCCUag -5'
23358 3' -60.4 NC_005259.1 + 60265 0.68 0.425146
Target:  5'- aGGcUGGcCACCa-GCGCUGCCGGGc- -3'
miRNA:   3'- -CCaGCCuGUGGcgCGCGACGGCCUag -5'
23358 3' -60.4 NC_005259.1 + 27482 0.68 0.416199
Target:  5'- gGGUCGGuguggcCACCGCcccaCGC-GCCGaGGUCg -3'
miRNA:   3'- -CCAGCCu-----GUGGCGc---GCGaCGGC-CUAG- -5'
23358 3' -60.4 NC_005259.1 + 35634 0.68 0.416199
Target:  5'- -uUCGGGcCGCCGC-CGCUGCCGc--- -3'
miRNA:   3'- ccAGCCU-GUGGCGcGCGACGGCcuag -5'
23358 3' -60.4 NC_005259.1 + 68703 0.68 0.407369
Target:  5'- aGG-CGGGCAgCGCGuCGgUGCCcgagaacugGGGUCg -3'
miRNA:   3'- -CCaGCCUGUgGCGC-GCgACGG---------CCUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.