Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2336 | 3' | -51.5 | NC_001416.1 | + | 9415 | 0.67 | 0.764425 |
Target: 5'- --cGGUaaCAGCGGCAACCgGCAuGAccGUGa -3' miRNA: 3'- agaCCA--GUCGUCGUUGG-CGUuCU--UAC- -5' |
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2336 | 3' | -51.5 | NC_001416.1 | + | 9310 | 0.68 | 0.720517 |
Target: 5'- gCUgGGUCAGCAGUAuCgGUAAGGcgGu -3' miRNA: 3'- aGA-CCAGUCGUCGUuGgCGUUCUuaC- -5' |
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2336 | 3' | -51.5 | NC_001416.1 | + | 37226 | 0.69 | 0.686523 |
Target: 5'- uUCUGGUCGGC-GCAuaGCUgauaacaauugaGCAAGAAUc -3' miRNA: 3'- -AGACCAGUCGuCGU--UGG------------CGUUCUUAc -5' |
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2336 | 3' | -51.5 | NC_001416.1 | + | 19335 | 0.7 | 0.628877 |
Target: 5'- -gUGGUcCGGCAGUAcaauggauuACCGUAAGAcgGa -3' miRNA: 3'- agACCA-GUCGUCGU---------UGGCGUUCUuaC- -5' |
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2336 | 3' | -51.5 | NC_001416.1 | + | 8495 | 0.73 | 0.420336 |
Target: 5'- -gUGGUCAGCGGC-ACCGCcaucGGGAUu -3' miRNA: 3'- agACCAGUCGUCGuUGGCGu---UCUUAc -5' |
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2336 | 3' | -51.5 | NC_001416.1 | + | 4683 | 0.76 | 0.323421 |
Target: 5'- gCUGGUCAGCcggacgcgggcgcuGCAGCCGUAcucgGGGAUGa -3' miRNA: 3'- aGACCAGUCGu-------------CGUUGGCGU----UCUUAC- -5' |
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2336 | 3' | -51.5 | NC_001416.1 | + | 5994 | 1.09 | 0.001836 |
Target: 5'- gUCUGGUCAGCAGCAACCGCAAGAAUGc -3' miRNA: 3'- -AGACCAGUCGUCGUUGGCGUUCUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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