miRNA display CGI


Results 41 - 60 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23360 3' -57.4 NC_005259.1 + 35272 0.7 0.445916
Target:  5'- cCGCCG-CGCCGGgGUCGCCGAuGUg-- -3'
miRNA:   3'- -GUGGCgGUGGUCgCAGUGGCU-CAagc -5'
23360 3' -57.4 NC_005259.1 + 35517 0.72 0.324918
Target:  5'- cCGCCGCCGCCGGgcacaccgcccgcCGUCGCCGA--UCc -3'
miRNA:   3'- -GUGGCGGUGGUC-------------GCAGUGGCUcaAGc -5'
23360 3' -57.4 NC_005259.1 + 35861 0.67 0.628489
Target:  5'- -uCCGCCGCC-GCGUCcaccgcagccgccGCCGAGg--- -3'
miRNA:   3'- guGGCGGUGGuCGCAG-------------UGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 36426 0.72 0.333427
Target:  5'- uCAUgGUCuGCgCAGCGUCGCCGAGgUCGa -3'
miRNA:   3'- -GUGgCGG-UG-GUCGCAGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 36673 0.72 0.318077
Target:  5'- cCGCCGCCGCCGGgGUCuugACCGuccUCGc -3'
miRNA:   3'- -GUGGCGGUGGUCgCAG---UGGCucaAGC- -5'
23360 3' -57.4 NC_005259.1 + 37207 0.69 0.504489
Target:  5'- uGCCGCCACCGcCGcCGCCGccGGggCGc -3'
miRNA:   3'- gUGGCGGUGGUcGCaGUGGC--UCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 37659 0.74 0.268573
Target:  5'- cCGCCGCCGCCGGUGcCGCCacGGUUgGu -3'
miRNA:   3'- -GUGGCGGUGGUCGCaGUGGc-UCAAgC- -5'
23360 3' -57.4 NC_005259.1 + 38592 0.67 0.629551
Target:  5'- uGCUGCCcgauCCGGUGUCACUGAccUUGg -3'
miRNA:   3'- gUGGCGGu---GGUCGCAGUGGCUcaAGC- -5'
23360 3' -57.4 NC_005259.1 + 38731 0.68 0.576627
Target:  5'- uGCCGCCguACCGGCGguggccCGCCGcAGgcCGg -3'
miRNA:   3'- gUGGCGG--UGGUCGCa-----GUGGC-UCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 41035 0.69 0.494483
Target:  5'- cCGCUGUCAacgucCCAGauCGUCACCGAGUgCGc -3'
miRNA:   3'- -GUGGCGGU-----GGUC--GCAGUGGCUCAaGC- -5'
23360 3' -57.4 NC_005259.1 + 43841 0.66 0.703455
Target:  5'- gGCCGCCGCUcGCcaUGCCGAGcgCa -3'
miRNA:   3'- gUGGCGGUGGuCGcaGUGGCUCaaGc -5'
23360 3' -57.4 NC_005259.1 + 44382 0.67 0.608317
Target:  5'- aCACCGcCCAUgA-UGUCGCCGAGcacgUCGg -3'
miRNA:   3'- -GUGGC-GGUGgUcGCAGUGGCUCa---AGC- -5'
23360 3' -57.4 NC_005259.1 + 44526 0.72 0.348505
Target:  5'- aCGCCGCCGcCCGGCaGUCcacucauGCCGAGacCGg -3'
miRNA:   3'- -GUGGCGGU-GGUCG-CAG-------UGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 45162 0.68 0.56614
Target:  5'- gGCCGCCcuugGCCuuguuGCG-CGCCGAGgUCa -3'
miRNA:   3'- gUGGCGG----UGGu----CGCaGUGGCUCaAGc -5'
23360 3' -57.4 NC_005259.1 + 45300 0.69 0.51458
Target:  5'- uUACCG-CGCCGGUGaCGCCGAGgcCGc -3'
miRNA:   3'- -GUGGCgGUGGUCGCaGUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 45342 0.66 0.682515
Target:  5'- cCugCGCCGCCuGgGcCGCCGcGUagUCGa -3'
miRNA:   3'- -GugGCGGUGGuCgCaGUGGCuCA--AGC- -5'
23360 3' -57.4 NC_005259.1 + 46692 0.66 0.693013
Target:  5'- aGCCGCCGCC-GCGUCcCuCGAcGcgCGu -3'
miRNA:   3'- gUGGCGGUGGuCGCAGuG-GCU-CaaGC- -5'
23360 3' -57.4 NC_005259.1 + 46885 0.71 0.390465
Target:  5'- gCGCCGCCGCCcgcgaugAGCGccCGCCGAGcagUCc -3'
miRNA:   3'- -GUGGCGGUGG-------UCGCa-GUGGCUCa--AGc -5'
23360 3' -57.4 NC_005259.1 + 47463 0.73 0.29606
Target:  5'- aACCggucaGCCACCGaggugaucGCGUCACCGAGgcgCGg -3'
miRNA:   3'- gUGG-----CGGUGGU--------CGCAGUGGCUCaa-GC- -5'
23360 3' -57.4 NC_005259.1 + 48179 0.73 0.282051
Target:  5'- cCGCCGCCGCCgGGUGUCggACCGGGcaugccgUCGu -3'
miRNA:   3'- -GUGGCGGUGG-UCGCAG--UGGCUCa------AGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.