miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23360 3' -57.4 NC_005259.1 + 18666 0.71 0.374136
Target:  5'- uGCCGCCGCCcgAGUacGUCAUCGAGggUCu -3'
miRNA:   3'- gUGGCGGUGG--UCG--CAGUGGCUCa-AGc -5'
23360 3' -57.4 NC_005259.1 + 22524 0.67 0.623177
Target:  5'- gCACCGUCGCCGGUGauuUCcagcaguccgaccucGCCGAGgUCa -3'
miRNA:   3'- -GUGGCGGUGGUCGC---AG---------------UGGCUCaAGc -5'
23360 3' -57.4 NC_005259.1 + 22681 0.69 0.491499
Target:  5'- gACCGCCGCCGauuuccccgccgucGcCGUCACCG-GcUCGa -3'
miRNA:   3'- gUGGCGGUGGU--------------C-GCAGUGGCuCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 22997 0.71 0.382673
Target:  5'- --aCGCCGCCgAG-GUCACCGAGgaCGg -3'
miRNA:   3'- gugGCGGUGG-UCgCAGUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 24132 0.78 0.148667
Target:  5'- aCACCGCCGCCGcccuGC-UCGCCGAGUUgCGc -3'
miRNA:   3'- -GUGGCGGUGGU----CGcAGUGGCUCAA-GC- -5'
23360 3' -57.4 NC_005259.1 + 24225 0.68 0.576627
Target:  5'- --aCGUgACCGGCGgggccgaggCACgCGAGUUCGg -3'
miRNA:   3'- gugGCGgUGGUCGCa--------GUG-GCUCAAGC- -5'
23360 3' -57.4 NC_005259.1 + 25187 0.68 0.555701
Target:  5'- aCGCCGCCGCCGauccCACCGGGgUCa -3'
miRNA:   3'- -GUGGCGGUGGUcgcaGUGGCUCaAGc -5'
23360 3' -57.4 NC_005259.1 + 26037 0.69 0.51458
Target:  5'- -uUgGCCAgCAGCGcCGCCGGGUUgGc -3'
miRNA:   3'- guGgCGGUgGUCGCaGUGGCUCAAgC- -5'
23360 3' -57.4 NC_005259.1 + 26065 0.7 0.418085
Target:  5'- uGCCGCCGCCgAGCaGUCccCCGAGgcCGc -3'
miRNA:   3'- gUGGCGGUGG-UCG-CAGu-GGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 26118 0.74 0.268573
Target:  5'- cCGCCGCCGCCGGUcgccgguccgacGcCGCCGAGgcCGa -3'
miRNA:   3'- -GUGGCGGUGGUCG------------CaGUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 26776 0.68 0.533974
Target:  5'- uGCCGCCggugccucggaacACCAGCGcCGCCGcccGGUUgGc -3'
miRNA:   3'- gUGGCGG-------------UGGUCGCaGUGGC---UCAAgC- -5'
23360 3' -57.4 NC_005259.1 + 26816 0.67 0.618929
Target:  5'- nGCCGgUACCGGCGguggUGCCGGGgcggUCu -3'
miRNA:   3'- gUGGCgGUGGUCGCa---GUGGCUCa---AGc -5'
23360 3' -57.4 NC_005259.1 + 27494 0.71 0.374136
Target:  5'- cCACCGCC-CCA-CG-CGCCGAGgUCGa -3'
miRNA:   3'- -GUGGCGGuGGUcGCaGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 27888 0.66 0.671974
Target:  5'- gCACCacgauCCACCuGGgGUCGCCGAGacCGc -3'
miRNA:   3'- -GUGGc----GGUGG-UCgCAGUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 28226 0.67 0.608317
Target:  5'- uGCCGCCACCGuCGgCGgCGGGguggUCGa -3'
miRNA:   3'- gUGGCGGUGGUcGCaGUgGCUCa---AGC- -5'
23360 3' -57.4 NC_005259.1 + 28630 0.66 0.682515
Target:  5'- gGCCaagGCCACCGGUGccgacacCGCCGAGgcCGc -3'
miRNA:   3'- gUGG---CGGUGGUCGCa------GUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 30765 0.66 0.703455
Target:  5'- uGCCGaCGCCGGUGgCACCGcugccguuGUUCGc -3'
miRNA:   3'- gUGGCgGUGGUCGCaGUGGCu-------CAAGC- -5'
23360 3' -57.4 NC_005259.1 + 30799 0.67 0.633802
Target:  5'- gUACCGCCggaacACCugagucggguaguccGGCG-CGCCGAGgUCGg -3'
miRNA:   3'- -GUGGCGG-----UGG---------------UCGCaGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 31786 0.67 0.608317
Target:  5'- gCugCGCCuugACCGcGuCGUCAUCGAGcUCGa -3'
miRNA:   3'- -GugGCGG---UGGU-C-GCAGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 33226 0.69 0.494483
Target:  5'- uGCCGCCGCCGGU--CACCGcGUaCGu -3'
miRNA:   3'- gUGGCGGUGGUCGcaGUGGCuCAaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.