Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23360 | 3' | -57.4 | NC_005259.1 | + | 53180 | 0.67 | 0.608317 |
Target: 5'- cCACCGCCGCCcgucgcGGUGUCcCCGGcGaUCa -3' miRNA: 3'- -GUGGCGGUGG------UCGCAGuGGCU-CaAGc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 17764 | 0.67 | 0.597723 |
Target: 5'- cCGCCGCgCGCCgggccgAGCG-CACCGAGcgugCGc -3' miRNA: 3'- -GUGGCG-GUGG------UCGCaGUGGCUCaa--GC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 31786 | 0.67 | 0.608317 |
Target: 5'- gCugCGCCuugACCGcGuCGUCAUCGAGcUCGa -3' miRNA: 3'- -GugGCGG---UGGU-C-GCAGUGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 60266 | 0.67 | 0.587158 |
Target: 5'- gGCUgGCCACCAGCGcUGCCGGGcggccaUCGu -3' miRNA: 3'- gUGG-CGGUGGUCGCaGUGGCUCa-----AGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 7316 | 0.67 | 0.597723 |
Target: 5'- -cCCGaguuCACCGcCGUCGCCGAGUacgUCGa -3' miRNA: 3'- guGGCg---GUGGUcGCAGUGGCUCA---AGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 44382 | 0.67 | 0.608317 |
Target: 5'- aCACCGcCCAUgA-UGUCGCCGAGcacgUCGg -3' miRNA: 3'- -GUGGC-GGUGgUcGCAGUGGCUCa---AGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 14508 | 0.67 | 0.612559 |
Target: 5'- cCGCaUGCaCACCGGCGagcacgcggugcguuUCgguGCCGAGUUCGu -3' miRNA: 3'- -GUG-GCG-GUGGUCGC---------------AG---UGGCUCAAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 22524 | 0.67 | 0.623177 |
Target: 5'- gCACCGUCGCCGGUGauuUCcagcaguccgaccucGCCGAGgUCa -3' miRNA: 3'- -GUGGCGGUGGUCGC---AG---------------UGGCUCaAGc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 35861 | 0.67 | 0.628489 |
Target: 5'- -uCCGCCGCC-GCGUCcaccgcagccgccGCCGAGg--- -3' miRNA: 3'- guGGCGGUGGuCGCAG-------------UGGCUCaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 38592 | 0.67 | 0.629551 |
Target: 5'- uGCUGCCcgauCCGGUGUCACUGAccUUGg -3' miRNA: 3'- gUGGCGGu---GGUCGCAGUGGCUcaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 13120 | 0.67 | 0.629551 |
Target: 5'- gGCgGCUacgACCAGCG-CACgGuGUUCGg -3' miRNA: 3'- gUGgCGG---UGGUCGCaGUGgCuCAAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 58195 | 0.68 | 0.56614 |
Target: 5'- gACCGCCgugggcuuGCCGGUGUCAgggucaguggccUCGAGcUCGg -3' miRNA: 3'- gUGGCGG--------UGGUCGCAGU------------GGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 48426 | 0.68 | 0.54532 |
Target: 5'- gACCGCCACCAcCGagGCgCGAGgcagCGg -3' miRNA: 3'- gUGGCGGUGGUcGCagUG-GCUCaa--GC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 26776 | 0.68 | 0.533974 |
Target: 5'- uGCCGCCggugccucggaacACCAGCGcCGCCGcccGGUUgGc -3' miRNA: 3'- gUGGCGG-------------UGGUCGCaGUGGC---UCAAgC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 45162 | 0.68 | 0.56614 |
Target: 5'- gGCCGCCcuugGCCuuguuGCG-CGCCGAGgUCa -3' miRNA: 3'- gUGGCGG----UGGu----CGCaGUGGCUCaAGc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 25187 | 0.68 | 0.555701 |
Target: 5'- aCGCCGCCGCCGauccCACCGGGgUCa -3' miRNA: 3'- -GUGGCGGUGGUcgcaGUGGCUCaAGc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 38731 | 0.68 | 0.576627 |
Target: 5'- uGCCGCCguACCGGCGguggccCGCCGcAGgcCGg -3' miRNA: 3'- gUGGCGG--UGGUCGCa-----GUGGC-UCaaGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 24225 | 0.68 | 0.576627 |
Target: 5'- --aCGUgACCGGCGgggccgaggCACgCGAGUUCGg -3' miRNA: 3'- gugGCGgUGGUCGCa--------GUG-GCUCAAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 22681 | 0.69 | 0.491499 |
Target: 5'- gACCGCCGCCGauuuccccgccgucGcCGUCACCG-GcUCGa -3' miRNA: 3'- gUGGCGGUGGU--------------C-GCAGUGGCuCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 6930 | 0.69 | 0.484569 |
Target: 5'- cCGCCGCCGCCu-UGagGCCGAGcUCGc -3' miRNA: 3'- -GUGGCGGUGGucGCagUGGCUCaAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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