Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23360 | 3' | -57.4 | NC_005259.1 | + | 750 | 0.66 | 0.682515 |
Target: 5'- aCGCCGCCgguGCCuaccGCGUCcaccgcGCCGAGg-CGg -3' miRNA: 3'- -GUGGCGG---UGGu---CGCAG------UGGCUCaaGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 1840 | 0.66 | 0.671974 |
Target: 5'- uCGCCGCUGCCGcCGagGCCGAGa--- -3' miRNA: 3'- -GUGGCGGUGGUcGCagUGGCUCaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 1865 | 0.74 | 0.261384 |
Target: 5'- aGCCGCCGCC-GCGUuccguaagcaggcCGCCGAGaUCGc -3' miRNA: 3'- gUGGCGGUGGuCGCA-------------GUGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 4418 | 0.75 | 0.231252 |
Target: 5'- gGCCGCCACCGcGCG-C-CCGAGgUCGa -3' miRNA: 3'- gUGGCGGUGGU-CGCaGuGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 5195 | 0.74 | 0.243182 |
Target: 5'- aCGCCGCCGCCAagcucaccGCGcUCGCCGAGc--- -3' miRNA: 3'- -GUGGCGGUGGU--------CGC-AGUGGCUCaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 6444 | 0.7 | 0.465034 |
Target: 5'- gCACCGUCGCgcugaucggCAGCGUCGCCG-GUg-- -3' miRNA: 3'- -GUGGCGGUG---------GUCGCAGUGGCuCAagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 6930 | 0.69 | 0.484569 |
Target: 5'- cCGCCGCCGCCu-UGagGCCGAGcUCGc -3' miRNA: 3'- -GUGGCGGUGGucGCagUGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 7316 | 0.67 | 0.597723 |
Target: 5'- -cCCGaguuCACCGcCGUCGCCGAGUacgUCGa -3' miRNA: 3'- guGGCg---GUGGUcGCAGUGGCUCA---AGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 7628 | 0.7 | 0.436523 |
Target: 5'- gGCCGgacCUACac-CGUCGCCGAGUUCGa -3' miRNA: 3'- gUGGC---GGUGgucGCAGUGGCUCAAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 8054 | 0.66 | 0.703455 |
Target: 5'- aCACCGCCggucGCCGcCGaCAUCGAGaUCGu -3' miRNA: 3'- -GUGGCGG----UGGUcGCaGUGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 8575 | 0.66 | 0.655038 |
Target: 5'- gCACCGCCACCgcccacgcacgauccGGCGgC-CUGAGUUg- -3' miRNA: 3'- -GUGGCGGUGG---------------UCGCaGuGGCUCAAgc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 9529 | 0.74 | 0.249336 |
Target: 5'- gACCGCCGCCGG-GUCACCGGa---- -3' miRNA: 3'- gUGGCGGUGGUCgCAGUGGCUcaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 11007 | 0.66 | 0.693013 |
Target: 5'- gCACCG-CGCCGGaCG-CGCCGAGg--- -3' miRNA: 3'- -GUGGCgGUGGUC-GCaGUGGCUCaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 12325 | 0.73 | 0.310604 |
Target: 5'- gCACCGCCGCCAGCucacgCACCGccgccUCGa -3' miRNA: 3'- -GUGGCGGUGGUCGca---GUGGCuca--AGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 13120 | 0.67 | 0.629551 |
Target: 5'- gGCgGCUacgACCAGCG-CACgGuGUUCGg -3' miRNA: 3'- gUGgCGG---UGGUCGCaGUGgCuCAAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 14328 | 0.69 | 0.51458 |
Target: 5'- aCGCCGCCGCCcGCGUgcgggcCGCCGAc---- -3' miRNA: 3'- -GUGGCGGUGGuCGCA------GUGGCUcaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 14384 | 0.66 | 0.693013 |
Target: 5'- -cUCGUCACCgAGC-UCGCCGAcacGUUCGu -3' miRNA: 3'- guGGCGGUGG-UCGcAGUGGCU---CAAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 14508 | 0.67 | 0.612559 |
Target: 5'- cCGCaUGCaCACCGGCGagcacgcggugcguuUCgguGCCGAGUUCGu -3' miRNA: 3'- -GUG-GCG-GUGGUCGC---------------AG---UGGCUCAAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 17764 | 0.67 | 0.597723 |
Target: 5'- cCGCCGCgCGCCgggccgAGCG-CACCGAGcgugCGc -3' miRNA: 3'- -GUGGCG-GUGG------UCGCaGUGGCUCaa--GC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 18300 | 0.7 | 0.455421 |
Target: 5'- aGCCGCCGuucugcCCGGUGUgcgaCACCGAGgcCGg -3' miRNA: 3'- gUGGCGGU------GGUCGCA----GUGGCUCaaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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