miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23360 3' -57.4 NC_005259.1 + 750 0.66 0.682515
Target:  5'- aCGCCGCCgguGCCuaccGCGUCcaccgcGCCGAGg-CGg -3'
miRNA:   3'- -GUGGCGG---UGGu---CGCAG------UGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 1840 0.66 0.671974
Target:  5'- uCGCCGCUGCCGcCGagGCCGAGa--- -3'
miRNA:   3'- -GUGGCGGUGGUcGCagUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 1865 0.74 0.261384
Target:  5'- aGCCGCCGCC-GCGUuccguaagcaggcCGCCGAGaUCGc -3'
miRNA:   3'- gUGGCGGUGGuCGCA-------------GUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 4418 0.75 0.231252
Target:  5'- gGCCGCCACCGcGCG-C-CCGAGgUCGa -3'
miRNA:   3'- gUGGCGGUGGU-CGCaGuGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 5195 0.74 0.243182
Target:  5'- aCGCCGCCGCCAagcucaccGCGcUCGCCGAGc--- -3'
miRNA:   3'- -GUGGCGGUGGU--------CGC-AGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 6444 0.7 0.465034
Target:  5'- gCACCGUCGCgcugaucggCAGCGUCGCCG-GUg-- -3'
miRNA:   3'- -GUGGCGGUG---------GUCGCAGUGGCuCAagc -5'
23360 3' -57.4 NC_005259.1 + 6930 0.69 0.484569
Target:  5'- cCGCCGCCGCCu-UGagGCCGAGcUCGc -3'
miRNA:   3'- -GUGGCGGUGGucGCagUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 7316 0.67 0.597723
Target:  5'- -cCCGaguuCACCGcCGUCGCCGAGUacgUCGa -3'
miRNA:   3'- guGGCg---GUGGUcGCAGUGGCUCA---AGC- -5'
23360 3' -57.4 NC_005259.1 + 7628 0.7 0.436523
Target:  5'- gGCCGgacCUACac-CGUCGCCGAGUUCGa -3'
miRNA:   3'- gUGGC---GGUGgucGCAGUGGCUCAAGC- -5'
23360 3' -57.4 NC_005259.1 + 8054 0.66 0.703455
Target:  5'- aCACCGCCggucGCCGcCGaCAUCGAGaUCGu -3'
miRNA:   3'- -GUGGCGG----UGGUcGCaGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 8575 0.66 0.655038
Target:  5'- gCACCGCCACCgcccacgcacgauccGGCGgC-CUGAGUUg- -3'
miRNA:   3'- -GUGGCGGUGG---------------UCGCaGuGGCUCAAgc -5'
23360 3' -57.4 NC_005259.1 + 9529 0.74 0.249336
Target:  5'- gACCGCCGCCGG-GUCACCGGa---- -3'
miRNA:   3'- gUGGCGGUGGUCgCAGUGGCUcaagc -5'
23360 3' -57.4 NC_005259.1 + 11007 0.66 0.693013
Target:  5'- gCACCG-CGCCGGaCG-CGCCGAGg--- -3'
miRNA:   3'- -GUGGCgGUGGUC-GCaGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 12325 0.73 0.310604
Target:  5'- gCACCGCCGCCAGCucacgCACCGccgccUCGa -3'
miRNA:   3'- -GUGGCGGUGGUCGca---GUGGCuca--AGC- -5'
23360 3' -57.4 NC_005259.1 + 13120 0.67 0.629551
Target:  5'- gGCgGCUacgACCAGCG-CACgGuGUUCGg -3'
miRNA:   3'- gUGgCGG---UGGUCGCaGUGgCuCAAGC- -5'
23360 3' -57.4 NC_005259.1 + 14328 0.69 0.51458
Target:  5'- aCGCCGCCGCCcGCGUgcgggcCGCCGAc---- -3'
miRNA:   3'- -GUGGCGGUGGuCGCA------GUGGCUcaagc -5'
23360 3' -57.4 NC_005259.1 + 14384 0.66 0.693013
Target:  5'- -cUCGUCACCgAGC-UCGCCGAcacGUUCGu -3'
miRNA:   3'- guGGCGGUGG-UCGcAGUGGCU---CAAGC- -5'
23360 3' -57.4 NC_005259.1 + 14508 0.67 0.612559
Target:  5'- cCGCaUGCaCACCGGCGagcacgcggugcguuUCgguGCCGAGUUCGu -3'
miRNA:   3'- -GUG-GCG-GUGGUCGC---------------AG---UGGCUCAAGC- -5'
23360 3' -57.4 NC_005259.1 + 17764 0.67 0.597723
Target:  5'- cCGCCGCgCGCCgggccgAGCG-CACCGAGcgugCGc -3'
miRNA:   3'- -GUGGCG-GUGG------UCGCaGUGGCUCaa--GC- -5'
23360 3' -57.4 NC_005259.1 + 18300 0.7 0.455421
Target:  5'- aGCCGCCGuucugcCCGGUGUgcgaCACCGAGgcCGg -3'
miRNA:   3'- gUGGCGGU------GGUCGCA----GUGGCUCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.