Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23360 | 3' | -57.4 | NC_005259.1 | + | 24132 | 0.78 | 0.148667 |
Target: 5'- aCACCGCCGCCGcccuGC-UCGCCGAGUUgCGc -3' miRNA: 3'- -GUGGCGGUGGU----CGcAGUGGCUCAA-GC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 63168 | 0.75 | 0.21982 |
Target: 5'- aGCCGCCG-CAGCGcCGCCGAGgugaUCGc -3' miRNA: 3'- gUGGCGGUgGUCGCaGUGGCUCa---AGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 4418 | 0.75 | 0.231252 |
Target: 5'- gGCCGCCACCGcGCG-C-CCGAGgUCGa -3' miRNA: 3'- gUGGCGGUGGU-CGCaGuGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 5195 | 0.74 | 0.243182 |
Target: 5'- aCGCCGCCGCCAagcucaccGCGcUCGCCGAGc--- -3' miRNA: 3'- -GUGGCGGUGGU--------CGC-AGUGGCUCaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 9529 | 0.74 | 0.249336 |
Target: 5'- gACCGCCGCCGG-GUCACCGGa---- -3' miRNA: 3'- gUGGCGGUGGUCgCAGUGGCUcaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 1865 | 0.74 | 0.261384 |
Target: 5'- aGCCGCCGCC-GCGUuccguaagcaggcCGCCGAGaUCGc -3' miRNA: 3'- gUGGCGGUGGuCGCA-------------GUGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 37659 | 0.74 | 0.268573 |
Target: 5'- cCGCCGCCGCCGGUGcCGCCacGGUUgGu -3' miRNA: 3'- -GUGGCGGUGGUCGCaGUGGc-UCAAgC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 26118 | 0.74 | 0.268573 |
Target: 5'- cCGCCGCCGCCGGUcgccgguccgacGcCGCCGAGgcCGa -3' miRNA: 3'- -GUGGCGGUGGUCG------------CaGUGGCUCaaGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 52132 | 0.74 | 0.275246 |
Target: 5'- gCACCGCCGuCCGGCaccUCGCCGAGg--- -3' miRNA: 3'- -GUGGCGGU-GGUCGc--AGUGGCUCaagc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 48179 | 0.73 | 0.282051 |
Target: 5'- cCGCCGCCGCCgGGUGUCggACCGGGcaugccgUCGu -3' miRNA: 3'- -GUGGCGGUGG-UCGCAG--UGGCUCa------AGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 47463 | 0.73 | 0.29606 |
Target: 5'- aACCggucaGCCACCGaggugaucGCGUCACCGAGgcgCGg -3' miRNA: 3'- gUGG-----CGGUGGU--------CGCAGUGGCUCaa-GC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 12325 | 0.73 | 0.310604 |
Target: 5'- gCACCGCCGCCAGCucacgCACCGccgccUCGa -3' miRNA: 3'- -GUGGCGGUGGUCGca---GUGGCuca--AGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 36673 | 0.72 | 0.318077 |
Target: 5'- cCGCCGCCGCCGGgGUCuugACCGuccUCGc -3' miRNA: 3'- -GUGGCGGUGGUCgCAG---UGGCucaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 35517 | 0.72 | 0.324918 |
Target: 5'- cCGCCGCCGCCGGgcacaccgcccgcCGUCGCCGA--UCc -3' miRNA: 3'- -GUGGCGGUGGUC-------------GCAGUGGCUcaAGc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 36426 | 0.72 | 0.333427 |
Target: 5'- uCAUgGUCuGCgCAGCGUCGCCGAGgUCGa -3' miRNA: 3'- -GUGgCGG-UG-GUCGCAGUGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 44526 | 0.72 | 0.348505 |
Target: 5'- aCGCCGCCGcCCGGCaGUCcacucauGCCGAGacCGg -3' miRNA: 3'- -GUGGCGGU-GGUCG-CAG-------UGGCUCaaGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 18666 | 0.71 | 0.374136 |
Target: 5'- uGCCGCCGCCcgAGUacGUCAUCGAGggUCu -3' miRNA: 3'- gUGGCGGUGG--UCG--CAGUGGCUCa-AGc -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 27494 | 0.71 | 0.374136 |
Target: 5'- cCACCGCC-CCA-CG-CGCCGAGgUCGa -3' miRNA: 3'- -GUGGCGGuGGUcGCaGUGGCUCaAGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 22997 | 0.71 | 0.382673 |
Target: 5'- --aCGCCGCCgAG-GUCACCGAGgaCGg -3' miRNA: 3'- gugGCGGUGG-UCgCAGUGGCUCaaGC- -5' |
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23360 | 3' | -57.4 | NC_005259.1 | + | 46885 | 0.71 | 0.390465 |
Target: 5'- gCGCCGCCGCCcgcgaugAGCGccCGCCGAGcagUCc -3' miRNA: 3'- -GUGGCGGUGG-------UCGCa-GUGGCUCa--AGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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