miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23360 3' -57.4 NC_005259.1 + 24132 0.78 0.148667
Target:  5'- aCACCGCCGCCGcccuGC-UCGCCGAGUUgCGc -3'
miRNA:   3'- -GUGGCGGUGGU----CGcAGUGGCUCAA-GC- -5'
23360 3' -57.4 NC_005259.1 + 63168 0.75 0.21982
Target:  5'- aGCCGCCG-CAGCGcCGCCGAGgugaUCGc -3'
miRNA:   3'- gUGGCGGUgGUCGCaGUGGCUCa---AGC- -5'
23360 3' -57.4 NC_005259.1 + 4418 0.75 0.231252
Target:  5'- gGCCGCCACCGcGCG-C-CCGAGgUCGa -3'
miRNA:   3'- gUGGCGGUGGU-CGCaGuGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 5195 0.74 0.243182
Target:  5'- aCGCCGCCGCCAagcucaccGCGcUCGCCGAGc--- -3'
miRNA:   3'- -GUGGCGGUGGU--------CGC-AGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 9529 0.74 0.249336
Target:  5'- gACCGCCGCCGG-GUCACCGGa---- -3'
miRNA:   3'- gUGGCGGUGGUCgCAGUGGCUcaagc -5'
23360 3' -57.4 NC_005259.1 + 1865 0.74 0.261384
Target:  5'- aGCCGCCGCC-GCGUuccguaagcaggcCGCCGAGaUCGc -3'
miRNA:   3'- gUGGCGGUGGuCGCA-------------GUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 37659 0.74 0.268573
Target:  5'- cCGCCGCCGCCGGUGcCGCCacGGUUgGu -3'
miRNA:   3'- -GUGGCGGUGGUCGCaGUGGc-UCAAgC- -5'
23360 3' -57.4 NC_005259.1 + 26118 0.74 0.268573
Target:  5'- cCGCCGCCGCCGGUcgccgguccgacGcCGCCGAGgcCGa -3'
miRNA:   3'- -GUGGCGGUGGUCG------------CaGUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 52132 0.74 0.275246
Target:  5'- gCACCGCCGuCCGGCaccUCGCCGAGg--- -3'
miRNA:   3'- -GUGGCGGU-GGUCGc--AGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 48179 0.73 0.282051
Target:  5'- cCGCCGCCGCCgGGUGUCggACCGGGcaugccgUCGu -3'
miRNA:   3'- -GUGGCGGUGG-UCGCAG--UGGCUCa------AGC- -5'
23360 3' -57.4 NC_005259.1 + 47463 0.73 0.29606
Target:  5'- aACCggucaGCCACCGaggugaucGCGUCACCGAGgcgCGg -3'
miRNA:   3'- gUGG-----CGGUGGU--------CGCAGUGGCUCaa-GC- -5'
23360 3' -57.4 NC_005259.1 + 12325 0.73 0.310604
Target:  5'- gCACCGCCGCCAGCucacgCACCGccgccUCGa -3'
miRNA:   3'- -GUGGCGGUGGUCGca---GUGGCuca--AGC- -5'
23360 3' -57.4 NC_005259.1 + 36673 0.72 0.318077
Target:  5'- cCGCCGCCGCCGGgGUCuugACCGuccUCGc -3'
miRNA:   3'- -GUGGCGGUGGUCgCAG---UGGCucaAGC- -5'
23360 3' -57.4 NC_005259.1 + 35517 0.72 0.324918
Target:  5'- cCGCCGCCGCCGGgcacaccgcccgcCGUCGCCGA--UCc -3'
miRNA:   3'- -GUGGCGGUGGUC-------------GCAGUGGCUcaAGc -5'
23360 3' -57.4 NC_005259.1 + 36426 0.72 0.333427
Target:  5'- uCAUgGUCuGCgCAGCGUCGCCGAGgUCGa -3'
miRNA:   3'- -GUGgCGG-UG-GUCGCAGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 44526 0.72 0.348505
Target:  5'- aCGCCGCCGcCCGGCaGUCcacucauGCCGAGacCGg -3'
miRNA:   3'- -GUGGCGGU-GGUCG-CAG-------UGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 27494 0.71 0.374136
Target:  5'- cCACCGCC-CCA-CG-CGCCGAGgUCGa -3'
miRNA:   3'- -GUGGCGGuGGUcGCaGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 18666 0.71 0.374136
Target:  5'- uGCCGCCGCCcgAGUacGUCAUCGAGggUCu -3'
miRNA:   3'- gUGGCGGUGG--UCG--CAGUGGCUCa-AGc -5'
23360 3' -57.4 NC_005259.1 + 22997 0.71 0.382673
Target:  5'- --aCGCCGCCgAG-GUCACCGAGgaCGg -3'
miRNA:   3'- gugGCGGUGG-UCgCAGUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 46885 0.71 0.390465
Target:  5'- gCGCCGCCGCCcgcgaugAGCGccCGCCGAGcagUCc -3'
miRNA:   3'- -GUGGCGGUGG-------UCGCa-GUGGCUCa--AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.