miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23360 3' -57.4 NC_005259.1 + 67990 0.66 0.682515
Target:  5'- cCACCGCCGCgAGCGUCgacuuGCCcuccugCGg -3'
miRNA:   3'- -GUGGCGGUGgUCGCAG-----UGGcucaa-GC- -5'
23360 3' -57.4 NC_005259.1 + 63673 0.66 0.682515
Target:  5'- aCACCucgGgCACCGGCG-CGCCGGGg--- -3'
miRNA:   3'- -GUGG---CgGUGGUCGCaGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 63168 0.75 0.21982
Target:  5'- aGCCGCCG-CAGCGcCGCCGAGgugaUCGc -3'
miRNA:   3'- gUGGCGGUgGUCGCaGUGGCUCa---AGC- -5'
23360 3' -57.4 NC_005259.1 + 60266 0.67 0.587158
Target:  5'- gGCUgGCCACCAGCGcUGCCGGGcggccaUCGu -3'
miRNA:   3'- gUGG-CGGUGGUCGCaGUGGCUCa-----AGC- -5'
23360 3' -57.4 NC_005259.1 + 58706 0.7 0.455421
Target:  5'- uCGCCGCCGCCGuCaccaUCGCCGGGggugUCGu -3'
miRNA:   3'- -GUGGCGGUGGUcGc---AGUGGCUCa---AGC- -5'
23360 3' -57.4 NC_005259.1 + 58464 0.69 0.484569
Target:  5'- uCGCgGCCACCAGUgcguggcuGUCGCCGAcgacaUCGa -3'
miRNA:   3'- -GUGgCGGUGGUCG--------CAGUGGCUca---AGC- -5'
23360 3' -57.4 NC_005259.1 + 58399 0.69 0.510534
Target:  5'- gCACCaGCCACCGGCGgcgaucagagaucCACCGGGc--- -3'
miRNA:   3'- -GUGG-CGGUGGUCGCa------------GUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 58195 0.68 0.56614
Target:  5'- gACCGCCgugggcuuGCCGGUGUCAgggucaguggccUCGAGcUCGg -3'
miRNA:   3'- gUGGCGG--------UGGUCGCAGU------------GGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 57689 0.66 0.650795
Target:  5'- gACCGUgGCCAG-GUUGCCGGGcUUGc -3'
miRNA:   3'- gUGGCGgUGGUCgCAGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 54006 0.71 0.409046
Target:  5'- aCGCCGggguCCACCAGCGaCGCuCGGGcgCGg -3'
miRNA:   3'- -GUGGC----GGUGGUCGCaGUG-GCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 53267 0.69 0.51458
Target:  5'- cCGCUGUCGCCGGUGcCGCCaAGaUCGa -3'
miRNA:   3'- -GUGGCGGUGGUCGCaGUGGcUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 53180 0.67 0.608317
Target:  5'- cCACCGCCGCCcgucgcGGUGUCcCCGGcGaUCa -3'
miRNA:   3'- -GUGGCGGUGG------UCGCAGuGGCU-CaAGc -5'
23360 3' -57.4 NC_005259.1 + 52581 0.66 0.682515
Target:  5'- gACCgGCC-UgAGCGUCGCCGAGc--- -3'
miRNA:   3'- gUGG-CGGuGgUCGCAGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 52132 0.74 0.275246
Target:  5'- gCACCGCCGuCCGGCaccUCGCCGAGg--- -3'
miRNA:   3'- -GUGGCGGU-GGUCGc--AGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 50751 0.66 0.650795
Target:  5'- aGCCGCCACgCGGUGUCGgaCGAcaccUCGg -3'
miRNA:   3'- gUGGCGGUG-GUCGCAGUg-GCUca--AGC- -5'
23360 3' -57.4 NC_005259.1 + 48426 0.68 0.54532
Target:  5'- gACCGCCACCAcCGagGCgCGAGgcagCGg -3'
miRNA:   3'- gUGGCGGUGGUcGCagUG-GCUCaa--GC- -5'
23360 3' -57.4 NC_005259.1 + 48179 0.73 0.282051
Target:  5'- cCGCCGCCGCCgGGUGUCggACCGGGcaugccgUCGu -3'
miRNA:   3'- -GUGGCGGUGG-UCGCAG--UGGCUCa------AGC- -5'
23360 3' -57.4 NC_005259.1 + 47463 0.73 0.29606
Target:  5'- aACCggucaGCCACCGaggugaucGCGUCACCGAGgcgCGg -3'
miRNA:   3'- gUGG-----CGGUGGU--------CGCAGUGGCUCaa-GC- -5'
23360 3' -57.4 NC_005259.1 + 46885 0.71 0.390465
Target:  5'- gCGCCGCCGCCcgcgaugAGCGccCGCCGAGcagUCc -3'
miRNA:   3'- -GUGGCGGUGG-------UCGCa-GUGGCUCa--AGc -5'
23360 3' -57.4 NC_005259.1 + 46692 0.66 0.693013
Target:  5'- aGCCGCCGCC-GCGUCcCuCGAcGcgCGu -3'
miRNA:   3'- gUGGCGGUGGuCGCAGuG-GCU-CaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.