miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23360 3' -57.4 NC_005259.1 + 26037 0.69 0.51458
Target:  5'- -uUgGCCAgCAGCGcCGCCGGGUUgGc -3'
miRNA:   3'- guGgCGGUgGUCGCaGUGGCUCAAgC- -5'
23360 3' -57.4 NC_005259.1 + 14328 0.69 0.51458
Target:  5'- aCGCCGCCGCCcGCGUgcgggcCGCCGAc---- -3'
miRNA:   3'- -GUGGCGGUGGuCGCA------GUGGCUcaagc -5'
23360 3' -57.4 NC_005259.1 + 58399 0.69 0.510534
Target:  5'- gCACCaGCCACCGGCGgcgaucagagaucCACCGGGc--- -3'
miRNA:   3'- -GUGG-CGGUGGUCGCa------------GUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 37207 0.69 0.504489
Target:  5'- uGCCGCCACCGcCGcCGCCGccGGggCGc -3'
miRNA:   3'- gUGGCGGUGGUcGCaGUGGC--UCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 41035 0.69 0.494483
Target:  5'- cCGCUGUCAacgucCCAGauCGUCACCGAGUgCGc -3'
miRNA:   3'- -GUGGCGGU-----GGUC--GCAGUGGCUCAaGC- -5'
23360 3' -57.4 NC_005259.1 + 33226 0.69 0.494483
Target:  5'- uGCCGCCGCCGGU--CACCGcGUaCGu -3'
miRNA:   3'- gUGGCGGUGGUCGcaGUGGCuCAaGC- -5'
23360 3' -57.4 NC_005259.1 + 22681 0.69 0.491499
Target:  5'- gACCGCCGCCGauuuccccgccgucGcCGUCACCG-GcUCGa -3'
miRNA:   3'- gUGGCGGUGGU--------------C-GCAGUGGCuCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 6930 0.69 0.484569
Target:  5'- cCGCCGCCGCCu-UGagGCCGAGcUCGc -3'
miRNA:   3'- -GUGGCGGUGGucGCagUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 58464 0.69 0.484569
Target:  5'- uCGCgGCCACCAGUgcguggcuGUCGCCGAcgacaUCGa -3'
miRNA:   3'- -GUGgCGGUGGUCG--------CAGUGGCUca---AGC- -5'
23360 3' -57.4 NC_005259.1 + 6444 0.7 0.465034
Target:  5'- gCACCGUCGCgcugaucggCAGCGUCGCCG-GUg-- -3'
miRNA:   3'- -GUGGCGGUG---------GUCGCAGUGGCuCAagc -5'
23360 3' -57.4 NC_005259.1 + 18300 0.7 0.455421
Target:  5'- aGCCGCCGuucugcCCGGUGUgcgaCACCGAGgcCGg -3'
miRNA:   3'- gUGGCGGU------GGUCGCA----GUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 58706 0.7 0.455421
Target:  5'- uCGCCGCCGCCGuCaccaUCGCCGGGggugUCGu -3'
miRNA:   3'- -GUGGCGGUGGUcGc---AGUGGCUCa---AGC- -5'
23360 3' -57.4 NC_005259.1 + 35272 0.7 0.445916
Target:  5'- cCGCCG-CGCCGGgGUCGCCGAuGUg-- -3'
miRNA:   3'- -GUGGCgGUGGUCgCAGUGGCU-CAagc -5'
23360 3' -57.4 NC_005259.1 + 7628 0.7 0.436523
Target:  5'- gGCCGgacCUACac-CGUCGCCGAGUUCGa -3'
miRNA:   3'- gUGGC---GGUGgucGCAGUGGCUCAAGC- -5'
23360 3' -57.4 NC_005259.1 + 26065 0.7 0.418085
Target:  5'- uGCCGCCGCCgAGCaGUCccCCGAGgcCGc -3'
miRNA:   3'- gUGGCGGUGG-UCG-CAGu-GGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 54006 0.71 0.409046
Target:  5'- aCGCCGggguCCACCAGCGaCGCuCGGGcgCGg -3'
miRNA:   3'- -GUGGC----GGUGGUCGCaGUG-GCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 46885 0.71 0.390465
Target:  5'- gCGCCGCCGCCcgcgaugAGCGccCGCCGAGcagUCc -3'
miRNA:   3'- -GUGGCGGUGG-------UCGCa-GUGGCUCa--AGc -5'
23360 3' -57.4 NC_005259.1 + 22997 0.71 0.382673
Target:  5'- --aCGCCGCCgAG-GUCACCGAGgaCGg -3'
miRNA:   3'- gugGCGGUGG-UCgCAGUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 27494 0.71 0.374136
Target:  5'- cCACCGCC-CCA-CG-CGCCGAGgUCGa -3'
miRNA:   3'- -GUGGCGGuGGUcGCaGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 18666 0.71 0.374136
Target:  5'- uGCCGCCGCCcgAGUacGUCAUCGAGggUCu -3'
miRNA:   3'- gUGGCGGUGG--UCG--CAGUGGCUCa-AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.