miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23360 3' -57.4 NC_005259.1 + 35861 0.67 0.628489
Target:  5'- -uCCGCCGCC-GCGUCcaccgcagccgccGCCGAGg--- -3'
miRNA:   3'- guGGCGGUGGuCGCAG-------------UGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 22524 0.67 0.623177
Target:  5'- gCACCGUCGCCGGUGauuUCcagcaguccgaccucGCCGAGgUCa -3'
miRNA:   3'- -GUGGCGGUGGUCGC---AG---------------UGGCUCaAGc -5'
23360 3' -57.4 NC_005259.1 + 26816 0.67 0.618929
Target:  5'- nGCCGgUACCGGCGguggUGCCGGGgcggUCu -3'
miRNA:   3'- gUGGCgGUGGUCGCa---GUGGCUCa---AGc -5'
23360 3' -57.4 NC_005259.1 + 14508 0.67 0.612559
Target:  5'- cCGCaUGCaCACCGGCGagcacgcggugcguuUCgguGCCGAGUUCGu -3'
miRNA:   3'- -GUG-GCG-GUGGUCGC---------------AG---UGGCUCAAGC- -5'
23360 3' -57.4 NC_005259.1 + 44382 0.67 0.608317
Target:  5'- aCACCGcCCAUgA-UGUCGCCGAGcacgUCGg -3'
miRNA:   3'- -GUGGC-GGUGgUcGCAGUGGCUCa---AGC- -5'
23360 3' -57.4 NC_005259.1 + 31786 0.67 0.608317
Target:  5'- gCugCGCCuugACCGcGuCGUCAUCGAGcUCGa -3'
miRNA:   3'- -GugGCGG---UGGU-C-GCAGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 28226 0.67 0.608317
Target:  5'- uGCCGCCACCGuCGgCGgCGGGguggUCGa -3'
miRNA:   3'- gUGGCGGUGGUcGCaGUgGCUCa---AGC- -5'
23360 3' -57.4 NC_005259.1 + 53180 0.67 0.608317
Target:  5'- cCACCGCCGCCcgucgcGGUGUCcCCGGcGaUCa -3'
miRNA:   3'- -GUGGCGGUGG------UCGCAGuGGCU-CaAGc -5'
23360 3' -57.4 NC_005259.1 + 7316 0.67 0.597723
Target:  5'- -cCCGaguuCACCGcCGUCGCCGAGUacgUCGa -3'
miRNA:   3'- guGGCg---GUGGUcGCAGUGGCUCA---AGC- -5'
23360 3' -57.4 NC_005259.1 + 17764 0.67 0.597723
Target:  5'- cCGCCGCgCGCCgggccgAGCG-CACCGAGcgugCGc -3'
miRNA:   3'- -GUGGCG-GUGG------UCGCaGUGGCUCaa--GC- -5'
23360 3' -57.4 NC_005259.1 + 60266 0.67 0.587158
Target:  5'- gGCUgGCCACCAGCGcUGCCGGGcggccaUCGu -3'
miRNA:   3'- gUGG-CGGUGGUCGCaGUGGCUCa-----AGC- -5'
23360 3' -57.4 NC_005259.1 + 24225 0.68 0.576627
Target:  5'- --aCGUgACCGGCGgggccgaggCACgCGAGUUCGg -3'
miRNA:   3'- gugGCGgUGGUCGCa--------GUG-GCUCAAGC- -5'
23360 3' -57.4 NC_005259.1 + 38731 0.68 0.576627
Target:  5'- uGCCGCCguACCGGCGguggccCGCCGcAGgcCGg -3'
miRNA:   3'- gUGGCGG--UGGUCGCa-----GUGGC-UCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 45162 0.68 0.56614
Target:  5'- gGCCGCCcuugGCCuuguuGCG-CGCCGAGgUCa -3'
miRNA:   3'- gUGGCGG----UGGu----CGCaGUGGCUCaAGc -5'
23360 3' -57.4 NC_005259.1 + 58195 0.68 0.56614
Target:  5'- gACCGCCgugggcuuGCCGGUGUCAgggucaguggccUCGAGcUCGg -3'
miRNA:   3'- gUGGCGG--------UGGUCGCAGU------------GGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 25187 0.68 0.555701
Target:  5'- aCGCCGCCGCCGauccCACCGGGgUCa -3'
miRNA:   3'- -GUGGCGGUGGUcgcaGUGGCUCaAGc -5'
23360 3' -57.4 NC_005259.1 + 48426 0.68 0.54532
Target:  5'- gACCGCCACCAcCGagGCgCGAGgcagCGg -3'
miRNA:   3'- gUGGCGGUGGUcGCagUG-GCUCaa--GC- -5'
23360 3' -57.4 NC_005259.1 + 26776 0.68 0.533974
Target:  5'- uGCCGCCggugccucggaacACCAGCGcCGCCGcccGGUUgGc -3'
miRNA:   3'- gUGGCGG-------------UGGUCGCaGUGGC---UCAAgC- -5'
23360 3' -57.4 NC_005259.1 + 14328 0.69 0.51458
Target:  5'- aCGCCGCCGCCcGCGUgcgggcCGCCGAc---- -3'
miRNA:   3'- -GUGGCGGUGGuCGCA------GUGGCUcaagc -5'
23360 3' -57.4 NC_005259.1 + 53267 0.69 0.51458
Target:  5'- cCGCUGUCGCCGGUGcCGCCaAGaUCGa -3'
miRNA:   3'- -GUGGCGGUGGUCGCaGUGGcUCaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.