miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23364 3' -57.1 NC_005259.1 + 29930 0.67 0.601735
Target:  5'- -cGACGCG-UGGCC--GCCACGcGGCCc -3'
miRNA:   3'- caCUGCGUgACUGGcaCGGUGC-UCGG- -5'
23364 3' -57.1 NC_005259.1 + 31714 0.68 0.537476
Target:  5'- -cGAUGCcggucuucucugaGgUGACCGcgccUGCCGCGAGCg -3'
miRNA:   3'- caCUGCG-------------UgACUGGC----ACGGUGCUCGg -5'
23364 3' -57.1 NC_005259.1 + 32293 0.69 0.487627
Target:  5'- gGUGAUGCcUUGGCCcagaGCCuuGAGCCg -3'
miRNA:   3'- -CACUGCGuGACUGGca--CGGugCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 33567 0.67 0.623088
Target:  5'- -aGAacCGCccgaACuUGACCGcGUCGCGGGCCa -3'
miRNA:   3'- caCU--GCG----UG-ACUGGCaCGGUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 33907 0.67 0.64447
Target:  5'- -cGACGgGCcgaGACCG-GCCACGGuGCg -3'
miRNA:   3'- caCUGCgUGa--CUGGCaCGGUGCU-CGg -5'
23364 3' -57.1 NC_005259.1 + 36139 0.66 0.66581
Target:  5'- -cGcCGgGCUGuCCGUcGCCAUG-GCCa -3'
miRNA:   3'- caCuGCgUGACuGGCA-CGGUGCuCGG- -5'
23364 3' -57.1 NC_005259.1 + 37228 0.69 0.50773
Target:  5'- -cGGgGCGCUGGcCCGUGCCGgauUGGcuGCCg -3'
miRNA:   3'- caCUgCGUGACU-GGCACGGU---GCU--CGG- -5'
23364 3' -57.1 NC_005259.1 + 37416 0.74 0.250122
Target:  5'- uUGACGcCGCccGCCGUGCCAUuGGCCa -3'
miRNA:   3'- cACUGC-GUGacUGGCACGGUGcUCGG- -5'
23364 3' -57.1 NC_005259.1 + 38934 0.67 0.612403
Target:  5'- gGUGuuGCugUGcCCgGUGCCGCugccgccgaGAGCCu -3'
miRNA:   3'- -CACugCGugACuGG-CACGGUG---------CUCGG- -5'
23364 3' -57.1 NC_005259.1 + 39991 0.66 0.67644
Target:  5'- -cGACGgGCUGAUC--GCCGcCGAGCa -3'
miRNA:   3'- caCUGCgUGACUGGcaCGGU-GCUCGg -5'
23364 3' -57.1 NC_005259.1 + 40466 0.71 0.367629
Target:  5'- uUGACGUACUG-CCGgGCCGCGcGGUUg -3'
miRNA:   3'- cACUGCGUGACuGGCaCGGUGC-UCGG- -5'
23364 3' -57.1 NC_005259.1 + 42384 0.67 0.612403
Target:  5'- -aGGCGgGCaGGCCG-GuCCAUGAGUCg -3'
miRNA:   3'- caCUGCgUGaCUGGCaC-GGUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 48498 0.7 0.448606
Target:  5'- -cGACGCGCUugagGGCCGcgacuUGCCGCacuGCCg -3'
miRNA:   3'- caCUGCGUGA----CUGGC-----ACGGUGcu-CGG- -5'
23364 3' -57.1 NC_005259.1 + 48920 0.66 0.708052
Target:  5'- cUGG-GC-CUGACCGacGCCACGcacaaGGCCa -3'
miRNA:   3'- cACUgCGuGACUGGCa-CGGUGC-----UCGG- -5'
23364 3' -57.1 NC_005259.1 + 50244 0.66 0.68703
Target:  5'- -gGGCGCg--GAUCGUgGCCaACGGGCUa -3'
miRNA:   3'- caCUGCGugaCUGGCA-CGG-UGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 51151 0.67 0.591091
Target:  5'- aUGAgCGCGuucgggUUGACCGUG--GCGAGCCa -3'
miRNA:   3'- cACU-GCGU------GACUGGCACggUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 51521 0.71 0.402369
Target:  5'- -cGACGCGCgUGACCucGUGCaCG-GGGCCg -3'
miRNA:   3'- caCUGCGUG-ACUGG--CACG-GUgCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 55616 0.67 0.612403
Target:  5'- --cGCGCGCcuUGGCCGggaucaggGCCuguagACGAGCCc -3'
miRNA:   3'- cacUGCGUG--ACUGGCa-------CGG-----UGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 58182 0.66 0.708052
Target:  5'- -cGACGCACgucuUGACC--GCCGUGGGCUu -3'
miRNA:   3'- caCUGCGUG----ACUGGcaCGGUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 66007 0.67 0.643401
Target:  5'- cGUGguGCGCACccucggGGCCGcacguguUGCgCGCGAGCUc -3'
miRNA:   3'- -CAC--UGCGUGa-----CUGGC-------ACG-GUGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.