miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23370 3' -50.3 NC_005259.1 + 836 0.68 0.877036
Target:  5'- -cACGAGAccaaggucGCUGCGCAggccgaGUGCGagcGUGCg -3'
miRNA:   3'- guUGCUCUu-------CGAUGCGU------UACGC---CACG- -5'
23370 3' -50.3 NC_005259.1 + 981 0.7 0.796236
Target:  5'- gCGACGAGAcaccGGCa--GCcGUGUGGUGUa -3'
miRNA:   3'- -GUUGCUCU----UCGaugCGuUACGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 4270 0.69 0.868192
Target:  5'- aCAACGGGcGGCUGCGCugccacgagcacgGAccgGCGGcccUGCg -3'
miRNA:   3'- -GUUGCUCuUCGAUGCG-------------UUa--CGCC---ACG- -5'
23370 3' -50.3 NC_005259.1 + 5498 0.67 0.923725
Target:  5'- gAGCGAGGaucgAGCUACGCGcgccgcgcccgcaaGcUGUGGcUGCu -3'
miRNA:   3'- gUUGCUCU----UCGAUGCGU--------------U-ACGCC-ACG- -5'
23370 3' -50.3 NC_005259.1 + 6551 0.66 0.955899
Target:  5'- gAGCGGuGAAGCUGUGCGcgGC-GUGUc -3'
miRNA:   3'- gUUGCU-CUUCGAUGCGUuaCGcCACG- -5'
23370 3' -50.3 NC_005259.1 + 10226 0.7 0.825169
Target:  5'- -cACGAGAuGGCgcucacugaGCAcgGCGGUGUg -3'
miRNA:   3'- guUGCUCU-UCGaug------CGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 14061 0.66 0.963793
Target:  5'- gCGACGAGAcca---GCAcgGCGGUGg -3'
miRNA:   3'- -GUUGCUCUucgaugCGUuaCGCCACg -5'
23370 3' -50.3 NC_005259.1 + 14516 0.66 0.955899
Target:  5'- aCAcCGGcGAGC-ACGCGGUGCguuucGGUGCc -3'
miRNA:   3'- -GUuGCUcUUCGaUGCGUUACG-----CCACG- -5'
23370 3' -50.3 NC_005259.1 + 16515 0.67 0.919444
Target:  5'- gAGCGAGgcGCUGCGagcgucGCucaagGGUGCg -3'
miRNA:   3'- gUUGCUCuuCGAUGCguua--CG-----CCACG- -5'
23370 3' -50.3 NC_005259.1 + 17184 0.67 0.925516
Target:  5'- gCGGCGcaGGAAGCcGCGCGugagGCGG-GUa -3'
miRNA:   3'- -GUUGC--UCUUCGaUGCGUua--CGCCaCG- -5'
23370 3' -50.3 NC_005259.1 + 19090 0.66 0.957564
Target:  5'- -uACGAcAAGCUGCGCGAacucaccggcgcugGUGuGUGCg -3'
miRNA:   3'- guUGCUcUUCGAUGCGUUa-------------CGC-CACG- -5'
23370 3' -50.3 NC_005259.1 + 19199 0.67 0.919444
Target:  5'- aCAGCGA---GCU-CGUggUGCGGgcgGCg -3'
miRNA:   3'- -GUUGCUcuuCGAuGCGuuACGCCa--CG- -5'
23370 3' -50.3 NC_005259.1 + 19574 0.7 0.806075
Target:  5'- aCAGCGccgcauacuGGAAGCUGCaCAuucaacGUGCGGUGg -3'
miRNA:   3'- -GUUGC---------UCUUCGAUGcGU------UACGCCACg -5'
23370 3' -50.3 NC_005259.1 + 24231 0.71 0.744583
Target:  5'- cCGGCGGGGccgaGGC-ACGCGAguucgGCGaGUGCg -3'
miRNA:   3'- -GUUGCUCU----UCGaUGCGUUa----CGC-CACG- -5'
23370 3' -50.3 NC_005259.1 + 26014 0.66 0.963793
Target:  5'- gCAGCGGGAuGGC--CGCAA-GCGGguugGCc -3'
miRNA:   3'- -GUUGCUCU-UCGauGCGUUaCGCCa---CG- -5'
23370 3' -50.3 NC_005259.1 + 26353 0.68 0.884798
Target:  5'- --uCGGGccGAGCUGCGCGuagAUGuCGGUGg -3'
miRNA:   3'- guuGCUC--UUCGAUGCGU---UAC-GCCACg -5'
23370 3' -50.3 NC_005259.1 + 29005 0.66 0.955899
Target:  5'- -cACGAGAucg-GCG-AAUGCGGUGUc -3'
miRNA:   3'- guUGCUCUucgaUGCgUUACGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 30498 0.66 0.951544
Target:  5'- cCGGCGAGAccUUGCGCGAUGUGuUGa -3'
miRNA:   3'- -GUUGCUCUucGAUGCGUUACGCcACg -5'
23370 3' -50.3 NC_005259.1 + 31231 0.7 0.806075
Target:  5'- cCGAUGAGAccaUUGgGCGcgGCGGUGCc -3'
miRNA:   3'- -GUUGCUCUuc-GAUgCGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 33715 0.68 0.884034
Target:  5'- gGACG-GAuuCUGCGCGAUgaugucgcguggaGCGGUGUg -3'
miRNA:   3'- gUUGCuCUucGAUGCGUUA-------------CGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.