Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23370 | 3' | -50.3 | NC_005259.1 | + | 49736 | 0.66 | 0.963793 |
Target: 5'- gCGGCGAG-AGCUGCucguCAGUGaCGGUcuuGCc -3' miRNA: 3'- -GUUGCUCuUCGAUGc---GUUAC-GCCA---CG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 33715 | 0.68 | 0.884034 |
Target: 5'- gGACG-GAuuCUGCGCGAUgaugucgcguggaGCGGUGUg -3' miRNA: 3'- gUUGCuCUucGAUGCGUUA-------------CGCCACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 26353 | 0.68 | 0.884798 |
Target: 5'- --uCGGGccGAGCUGCGCGuagAUGuCGGUGg -3' miRNA: 3'- guuGCUC--UUCGAUGCGU---UAC-GCCACg -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 51864 | 0.68 | 0.899502 |
Target: 5'- -cACGAGcucAGGCUAcCGCGAgGUGGUGa -3' miRNA: 3'- guUGCUC---UUCGAU-GCGUUaCGCCACg -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 57018 | 0.67 | 0.913084 |
Target: 5'- uCAGCGc--GGCUcgGCGCGGUGgGGUcGCa -3' miRNA: 3'- -GUUGCucuUCGA--UGCGUUACgCCA-CG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 16515 | 0.67 | 0.919444 |
Target: 5'- gAGCGAGgcGCUGCGagcgucGCucaagGGUGCg -3' miRNA: 3'- gUUGCUCuuCGAUGCguua--CG-----CCACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 19199 | 0.67 | 0.919444 |
Target: 5'- aCAGCGA---GCU-CGUggUGCGGgcgGCg -3' miRNA: 3'- -GUUGCUcuuCGAuGCGuuACGCCa--CG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 5498 | 0.67 | 0.923725 |
Target: 5'- gAGCGAGGaucgAGCUACGCGcgccgcgcccgcaaGcUGUGGcUGCu -3' miRNA: 3'- gUUGCUCU----UCGAUGCGU--------------U-ACGCC-ACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 17184 | 0.67 | 0.925516 |
Target: 5'- gCGGCGcaGGAAGCcGCGCGugagGCGG-GUa -3' miRNA: 3'- -GUUGC--UCUUCGaUGCGUua--CGCCaCG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 836 | 0.68 | 0.877036 |
Target: 5'- -cACGAGAccaaggucGCUGCGCAggccgaGUGCGagcGUGCg -3' miRNA: 3'- guUGCUCUu-------CGAUGCGU------UACGC---CACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 4270 | 0.69 | 0.868192 |
Target: 5'- aCAACGGGcGGCUGCGCugccacgagcacgGAccgGCGGcccUGCg -3' miRNA: 3'- -GUUGCUCuUCGAUGCG-------------UUa--CGCC---ACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 38223 | 0.69 | 0.852188 |
Target: 5'- aCAGCGAGAAGUaGCGUGGaucaGCgauGGUGCc -3' miRNA: 3'- -GUUGCUCUUCGaUGCGUUa---CG---CCACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 67914 | 0.73 | 0.645111 |
Target: 5'- uCGGCGAGGucaAGCgcguagguCGCGAggaugaucuUGCGGUGCg -3' miRNA: 3'- -GUUGCUCU---UCGau------GCGUU---------ACGCCACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 54019 | 0.73 | 0.656366 |
Target: 5'- cCAGCGAc--GCUcggGCGCGGUGCGGUcuGCg -3' miRNA: 3'- -GUUGCUcuuCGA---UGCGUUACGCCA--CG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 49350 | 0.73 | 0.666476 |
Target: 5'- aGGCGAGAGGUgccGCGCGAUGaagaggcCGGUGa -3' miRNA: 3'- gUUGCUCUUCGa--UGCGUUAC-------GCCACg -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 24231 | 0.71 | 0.744583 |
Target: 5'- cCGGCGGGGccgaGGC-ACGCGAguucgGCGaGUGCg -3' miRNA: 3'- -GUUGCUCU----UCGaUGCGUUa----CGC-CACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 981 | 0.7 | 0.796236 |
Target: 5'- gCGACGAGAcaccGGCa--GCcGUGUGGUGUa -3' miRNA: 3'- -GUUGCUCU----UCGaugCGuUACGCCACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 19574 | 0.7 | 0.806075 |
Target: 5'- aCAGCGccgcauacuGGAAGCUGCaCAuucaacGUGCGGUGg -3' miRNA: 3'- -GUUGC---------UCUUCGAUGcGU------UACGCCACg -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 31231 | 0.7 | 0.806075 |
Target: 5'- cCGAUGAGAccaUUGgGCGcgGCGGUGCc -3' miRNA: 3'- -GUUGCUCUuc-GAUgCGUuaCGCCACG- -5' |
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23370 | 3' | -50.3 | NC_005259.1 | + | 10226 | 0.7 | 0.825169 |
Target: 5'- -cACGAGAuGGCgcucacugaGCAcgGCGGUGUg -3' miRNA: 3'- guUGCUCU-UCGaug------CGUuaCGCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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