miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23371 5' -50.2 NC_005259.1 + 40196 0.66 0.959185
Target:  5'- -uGACCUcCGAgagUCAUGUUcUGCUGCu -3'
miRNA:   3'- uuCUGGGcGCUa--AGUGUAAaACGGCG- -5'
23371 5' -50.2 NC_005259.1 + 56361 0.66 0.954593
Target:  5'- cGGGCaCGCGGUacagccgUCGCGg---GCCGCg -3'
miRNA:   3'- uUCUGgGCGCUA-------AGUGUaaaaCGGCG- -5'
23371 5' -50.2 NC_005259.1 + 33119 0.67 0.911423
Target:  5'- uAGGGCCaCGCGGcagccgccgCGCGUgaucUUGCCGUa -3'
miRNA:   3'- -UUCUGG-GCGCUaa-------GUGUAa---AACGGCG- -5'
23371 5' -50.2 NC_005259.1 + 51684 0.67 0.911423
Target:  5'- cGGGCgCGCGAUggucUCAUAgg-UGCCGa -3'
miRNA:   3'- uUCUGgGCGCUA----AGUGUaaaACGGCg -5'
23371 5' -50.2 NC_005259.1 + 60856 0.67 0.915341
Target:  5'- cGAGACUCGCGggUCGCGUUgaaucgaugacggUGUCa- -3'
miRNA:   3'- -UUCUGGGCGCuaAGUGUAAa------------ACGGcg -5'
23371 5' -50.2 NC_005259.1 + 26392 0.67 0.917895
Target:  5'- --uGCUCGCGAUUCcgacgccgggcGCGgcggUGCCGCc -3'
miRNA:   3'- uucUGGGCGCUAAG-----------UGUaaa-ACGGCG- -5'
23371 5' -50.2 NC_005259.1 + 51262 0.67 0.92996
Target:  5'- -cGGCUCGCGGUggUCACGgugcGCgGCa -3'
miRNA:   3'- uuCUGGGCGCUA--AGUGUaaaaCGgCG- -5'
23371 5' -50.2 NC_005259.1 + 18595 0.67 0.930532
Target:  5'- -cGACCC-CGAUgucuacgacaguccgCACAgcggugUGCCGCg -3'
miRNA:   3'- uuCUGGGcGCUAa--------------GUGUaaa---ACGGCG- -5'
23371 5' -50.2 NC_005259.1 + 56658 0.68 0.89028
Target:  5'- gAGGGCaCCGCGcgUCACGggcucGuuGCg -3'
miRNA:   3'- -UUCUG-GGCGCuaAGUGUaaaa-CggCG- -5'
23371 5' -50.2 NC_005259.1 + 54152 0.68 0.89028
Target:  5'- cGAGGCCCgGCGAUggGCAUa---CCGCa -3'
miRNA:   3'- -UUCUGGG-CGCUAagUGUAaaacGGCG- -5'
23371 5' -50.2 NC_005259.1 + 35086 0.68 0.874786
Target:  5'- -uGGCCUGCGcaGUcCACAagcagUUGCCGCc -3'
miRNA:   3'- uuCUGGGCGC--UAaGUGUaa---AACGGCG- -5'
23371 5' -50.2 NC_005259.1 + 3980 0.69 0.866636
Target:  5'- cGGuCCCGCGAgcaCGCGauggcggGCCGCg -3'
miRNA:   3'- uUCuGGGCGCUaa-GUGUaaaa---CGGCG- -5'
23371 5' -50.2 NC_005259.1 + 36827 0.69 0.849568
Target:  5'- uGAGACCCaCGGUugugCACGUgcugacGCCGCc -3'
miRNA:   3'- -UUCUGGGcGCUAa---GUGUAaaa---CGGCG- -5'
23371 5' -50.2 NC_005259.1 + 35845 0.69 0.840666
Target:  5'- --cGCCCGCGAg-CACAgguccGCCGCc -3'
miRNA:   3'- uucUGGGCGCUaaGUGUaaaa-CGGCG- -5'
23371 5' -50.2 NC_005259.1 + 20099 0.7 0.792878
Target:  5'- -cGACCCGUGGUgagcCGCcgUcucaagGCCGCa -3'
miRNA:   3'- uuCUGGGCGCUAa---GUGuaAaa----CGGCG- -5'
23371 5' -50.2 NC_005259.1 + 66667 0.71 0.729812
Target:  5'- cGGugCUGCGAUgcuCAUcgUGCCGCc -3'
miRNA:   3'- uUCugGGCGCUAaguGUAaaACGGCG- -5'
23371 5' -50.2 NC_005259.1 + 19824 0.71 0.76198
Target:  5'- gAAGACCC-UGAUcaUCGCGgcugcUGCCGCg -3'
miRNA:   3'- -UUCUGGGcGCUA--AGUGUaaa--ACGGCG- -5'
23371 5' -50.2 NC_005259.1 + 17054 0.71 0.76198
Target:  5'- -cGACCCcgagGCGGUgcgCGCAUUUgugcgucagGCCGCc -3'
miRNA:   3'- uuCUGGG----CGCUAa--GUGUAAAa--------CGGCG- -5'
23371 5' -50.2 NC_005259.1 + 31535 0.71 0.772437
Target:  5'- uGGugCCGUGAUagaUCGCcUUguagggUGCCGCu -3'
miRNA:   3'- uUCugGGCGCUA---AGUGuAAa-----ACGGCG- -5'
23371 5' -50.2 NC_005259.1 + 47816 0.72 0.674291
Target:  5'- cGAGACCuCGCGGgcCACcgc-UGCCGCu -3'
miRNA:   3'- -UUCUGG-GCGCUaaGUGuaaaACGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.