Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23371 | 5' | -50.2 | NC_005259.1 | + | 35086 | 0.68 | 0.874786 |
Target: 5'- -uGGCCUGCGcaGUcCACAagcagUUGCCGCc -3' miRNA: 3'- uuCUGGGCGC--UAaGUGUaa---AACGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 40196 | 0.66 | 0.959185 |
Target: 5'- -uGACCUcCGAgagUCAUGUUcUGCUGCu -3' miRNA: 3'- uuCUGGGcGCUa--AGUGUAAaACGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 56361 | 0.66 | 0.954593 |
Target: 5'- cGGGCaCGCGGUacagccgUCGCGg---GCCGCg -3' miRNA: 3'- uUCUGgGCGCUA-------AGUGUaaaaCGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 18595 | 0.67 | 0.930532 |
Target: 5'- -cGACCC-CGAUgucuacgacaguccgCACAgcggugUGCCGCg -3' miRNA: 3'- uuCUGGGcGCUAa--------------GUGUaaa---ACGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 51262 | 0.67 | 0.92996 |
Target: 5'- -cGGCUCGCGGUggUCACGgugcGCgGCa -3' miRNA: 3'- uuCUGGGCGCUA--AGUGUaaaaCGgCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 26392 | 0.67 | 0.917895 |
Target: 5'- --uGCUCGCGAUUCcgacgccgggcGCGgcggUGCCGCc -3' miRNA: 3'- uucUGGGCGCUAAG-----------UGUaaa-ACGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 60856 | 0.67 | 0.915341 |
Target: 5'- cGAGACUCGCGggUCGCGUUgaaucgaugacggUGUCa- -3' miRNA: 3'- -UUCUGGGCGCuaAGUGUAAa------------ACGGcg -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 51684 | 0.67 | 0.911423 |
Target: 5'- cGGGCgCGCGAUggucUCAUAgg-UGCCGa -3' miRNA: 3'- uUCUGgGCGCUA----AGUGUaaaACGGCg -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 33119 | 0.67 | 0.911423 |
Target: 5'- uAGGGCCaCGCGGcagccgccgCGCGUgaucUUGCCGUa -3' miRNA: 3'- -UUCUGG-GCGCUaa-------GUGUAa---AACGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 56658 | 0.68 | 0.89028 |
Target: 5'- gAGGGCaCCGCGcgUCACGggcucGuuGCg -3' miRNA: 3'- -UUCUG-GGCGCuaAGUGUaaaa-CggCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 54152 | 0.68 | 0.89028 |
Target: 5'- cGAGGCCCgGCGAUggGCAUa---CCGCa -3' miRNA: 3'- -UUCUGGG-CGCUAagUGUAaaacGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 36641 | 0.75 | 0.539279 |
Target: 5'- cAAGGCCCGCGAUcaGCGagccGCCGCc -3' miRNA: 3'- -UUCUGGGCGCUAagUGUaaaaCGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 3980 | 0.69 | 0.866636 |
Target: 5'- cGGuCCCGCGAgcaCGCGauggcggGCCGCg -3' miRNA: 3'- uUCuGGGCGCUaa-GUGUaaaa---CGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 36827 | 0.69 | 0.849568 |
Target: 5'- uGAGACCCaCGGUugugCACGUgcugacGCCGCc -3' miRNA: 3'- -UUCUGGGcGCUAa---GUGUAaaa---CGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 35845 | 0.69 | 0.840666 |
Target: 5'- --cGCCCGCGAg-CACAgguccGCCGCc -3' miRNA: 3'- uucUGGGCGCUaaGUGUaaaa-CGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 20099 | 0.7 | 0.792878 |
Target: 5'- -cGACCCGUGGUgagcCGCcgUcucaagGCCGCa -3' miRNA: 3'- uuCUGGGCGCUAa---GUGuaAaa----CGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 31535 | 0.71 | 0.772437 |
Target: 5'- uGGugCCGUGAUagaUCGCcUUguagggUGCCGCu -3' miRNA: 3'- uUCugGGCGCUA---AGUGuAAa-----ACGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 17054 | 0.71 | 0.76198 |
Target: 5'- -cGACCCcgagGCGGUgcgCGCAUUUgugcgucagGCCGCc -3' miRNA: 3'- uuCUGGG----CGCUAa--GUGUAAAa--------CGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 19824 | 0.71 | 0.76198 |
Target: 5'- gAAGACCC-UGAUcaUCGCGgcugcUGCCGCg -3' miRNA: 3'- -UUCUGGGcGCUA--AGUGUaaa--ACGGCG- -5' |
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23371 | 5' | -50.2 | NC_005259.1 | + | 66667 | 0.71 | 0.729812 |
Target: 5'- cGGugCUGCGAUgcuCAUcgUGCCGCc -3' miRNA: 3'- uUCugGGCGCUAaguGUAaaACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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