miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23374 3' -57 NC_005259.1 + 52051 0.66 0.706651
Target:  5'- cCGUCGAGGA--UC-GCGAcGCCGUCCu -3'
miRNA:   3'- -GUAGCUCUUucAGcCGCU-CGGCGGGc -5'
23374 3' -57 NC_005259.1 + 12372 0.66 0.706651
Target:  5'- --cCGAGguAGUCGGCGAgaGCgGCaUCGa -3'
miRNA:   3'- guaGCUCuuUCAGCCGCU--CGgCG-GGC- -5'
23374 3' -57 NC_005259.1 + 129 0.66 0.696198
Target:  5'- uCAUCGAGGccaaCGGCaagaccuacuGGGCuCGCCCGg -3'
miRNA:   3'- -GUAGCUCUuucaGCCG----------CUCG-GCGGGC- -5'
23374 3' -57 NC_005259.1 + 10769 0.66 0.696198
Target:  5'- uGUCGGGcgGGUCaucgaGGUGGGCCGCg-- -3'
miRNA:   3'- gUAGCUCuuUCAG-----CCGCUCGGCGggc -5'
23374 3' -57 NC_005259.1 + 9562 0.66 0.696198
Target:  5'- -cUCGAccgcGUCGGCGAGgUGCUCGu -3'
miRNA:   3'- guAGCUcuuuCAGCCGCUCgGCGGGC- -5'
23374 3' -57 NC_005259.1 + 27471 0.66 0.696198
Target:  5'- aAUUGGGGccgGGGUCGGUGuGGCCaccGCCCc -3'
miRNA:   3'- gUAGCUCU---UUCAGCCGC-UCGG---CGGGc -5'
23374 3' -57 NC_005259.1 + 29399 0.66 0.696198
Target:  5'- aCAcCGAGGGccUCGGCGAGCuCGUgCGc -3'
miRNA:   3'- -GUaGCUCUUucAGCCGCUCG-GCGgGC- -5'
23374 3' -57 NC_005259.1 + 43013 0.66 0.696198
Target:  5'- --aCGAGAAcaaacCGGCGAuGCCGCCg- -3'
miRNA:   3'- guaGCUCUUuca--GCCGCU-CGGCGGgc -5'
23374 3' -57 NC_005259.1 + 32896 0.66 0.685687
Target:  5'- --cCGGGGgcGagGGUGAGCCaCCCGg -3'
miRNA:   3'- guaGCUCUuuCagCCGCUCGGcGGGC- -5'
23374 3' -57 NC_005259.1 + 29888 0.66 0.681469
Target:  5'- uGUCGA---GGUCGGCaagcacaagggguGGCUGCCCGa -3'
miRNA:   3'- gUAGCUcuuUCAGCCGc------------UCGGCGGGC- -5'
23374 3' -57 NC_005259.1 + 5061 0.67 0.664531
Target:  5'- gGUCGAGAucgugggccGGGUCGaCGGGCCGgugucaCCGg -3'
miRNA:   3'- gUAGCUCU---------UUCAGCcGCUCGGCg-----GGC- -5'
23374 3' -57 NC_005259.1 + 61213 0.67 0.664531
Target:  5'- aCAUCGcAGGAAG-CGGCGGuGUgCGCaCCGa -3'
miRNA:   3'- -GUAGC-UCUUUCaGCCGCU-CG-GCG-GGC- -5'
23374 3' -57 NC_005259.1 + 28961 0.67 0.643262
Target:  5'- gCAUCGccGAGGUCGGUGccgaGGCCgcgagcGCCCGc -3'
miRNA:   3'- -GUAGCucUUUCAGCCGC----UCGG------CGGGC- -5'
23374 3' -57 NC_005259.1 + 37525 0.67 0.632608
Target:  5'- --aCGAGAAGaUCGuCGGGCCGCCg- -3'
miRNA:   3'- guaGCUCUUUcAGCcGCUCGGCGGgc -5'
23374 3' -57 NC_005259.1 + 33816 0.67 0.632608
Target:  5'- uCAUCGuGAcgGGGUcCGGCGAgagcuuuaucucGCCGUCCu -3'
miRNA:   3'- -GUAGCuCU--UUCA-GCCGCU------------CGGCGGGc -5'
23374 3' -57 NC_005259.1 + 28893 0.67 0.632608
Target:  5'- uCGUCaagcAGAuuGUCGGCGAcgaggaacGCCGCCUc -3'
miRNA:   3'- -GUAGc---UCUuuCAGCCGCU--------CGGCGGGc -5'
23374 3' -57 NC_005259.1 + 58792 0.67 0.611308
Target:  5'- gGUCGAGgcGGugauugccUCGGCGGGCuCGCgCUGc -3'
miRNA:   3'- gUAGCUCuuUC--------AGCCGCUCG-GCG-GGC- -5'
23374 3' -57 NC_005259.1 + 68122 0.67 0.611308
Target:  5'- gGUCGAGAGcAG-CGGCGAGCuCGgCa- -3'
miRNA:   3'- gUAGCUCUU-UCaGCCGCUCG-GCgGgc -5'
23374 3' -57 NC_005259.1 + 49427 0.68 0.600679
Target:  5'- --gCGAGAAAc-CGGCGAgcGCCGCCUu -3'
miRNA:   3'- guaGCUCUUUcaGCCGCU--CGGCGGGc -5'
23374 3' -57 NC_005259.1 + 57081 0.68 0.590075
Target:  5'- gCGUCGAGGAuGUCGGguCGAG-CGCCa- -3'
miRNA:   3'- -GUAGCUCUUuCAGCC--GCUCgGCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.