Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23374 | 3' | -57 | NC_005259.1 | + | 31179 | 0.71 | 0.402109 |
Target: 5'- -cUUGAGccAGUCGGCGAggauGCCGCCg- -3' miRNA: 3'- guAGCUCuuUCAGCCGCU----CGGCGGgc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 31240 | 0.68 | 0.548068 |
Target: 5'- cCAUUGGGcg---CGGCGGuGCCGCCCc -3' miRNA: 3'- -GUAGCUCuuucaGCCGCU-CGGCGGGc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 32896 | 0.66 | 0.685687 |
Target: 5'- --cCGGGGgcGagGGUGAGCCaCCCGg -3' miRNA: 3'- guaGCUCUuuCagCCGCUCGGcGGGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 33816 | 0.67 | 0.632608 |
Target: 5'- uCAUCGuGAcgGGGUcCGGCGAgagcuuuaucucGCCGUCCu -3' miRNA: 3'- -GUAGCuCU--UUCA-GCCGCU------------CGGCGGGc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 34105 | 0.75 | 0.226369 |
Target: 5'- aCAUCGAGAAcguGUCGccgggcGCGAGCaCGUCCGg -3' miRNA: 3'- -GUAGCUCUUu--CAGC------CGCUCG-GCGGGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 37525 | 0.67 | 0.632608 |
Target: 5'- --aCGAGAAGaUCGuCGGGCCGCCg- -3' miRNA: 3'- guaGCUCUUUcAGCcGCUCGGCGGgc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 38625 | 0.68 | 0.579505 |
Target: 5'- aCAUCGAGGgcggugacgccGAGUUGGCGAacucGCCGaaaUCGa -3' miRNA: 3'- -GUAGCUCU-----------UUCAGCCGCU----CGGCg--GGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 39047 | 0.69 | 0.507044 |
Target: 5'- uCAUCGGGAu-GUUGGCGAuGuuGCCg- -3' miRNA: 3'- -GUAGCUCUuuCAGCCGCU-CggCGGgc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 39118 | 0.69 | 0.527408 |
Target: 5'- aAUCGcGucacgacaUCGGUGAGCUGCCCGa -3' miRNA: 3'- gUAGCuCuuuc----AGCCGCUCGGCGGGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 43013 | 0.66 | 0.696198 |
Target: 5'- --aCGAGAAcaaacCGGCGAuGCCGCCg- -3' miRNA: 3'- guaGCUCUUuca--GCCGCU-CGGCGGgc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 46664 | 0.71 | 0.393265 |
Target: 5'- gGUUGAGGuucUCGGCGAGCUcgGCCUGa -3' miRNA: 3'- gUAGCUCUuucAGCCGCUCGG--CGGGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 46830 | 0.74 | 0.283299 |
Target: 5'- --cUGAGuGAGcgcccCGGCGAGCUGCCCGa -3' miRNA: 3'- guaGCUCuUUCa----GCCGCUCGGCGGGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 47177 | 0.71 | 0.420171 |
Target: 5'- --gCGGcGAAGGUCGGCGGuGCCGUCgGc -3' miRNA: 3'- guaGCU-CUUUCAGCCGCU-CGGCGGgC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 49427 | 0.68 | 0.600679 |
Target: 5'- --gCGAGAAAc-CGGCGAgcGCCGCCUu -3' miRNA: 3'- guaGCUCUUUcaGCCGCU--CGGCGGGc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 51334 | 0.69 | 0.536671 |
Target: 5'- --aCGAGGAuGcCGGUGAGCUcggauauGCCCGg -3' miRNA: 3'- guaGCUCUUuCaGCCGCUCGG-------CGGGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 52051 | 0.66 | 0.706651 |
Target: 5'- cCGUCGAGGA--UC-GCGAcGCCGUCCu -3' miRNA: 3'- -GUAGCUCUUucAGcCGCU-CGGCGGGc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 56249 | 0.73 | 0.304646 |
Target: 5'- aCGUUGGGA---UCGGCGGccuugagcgccGCCGCCCGg -3' miRNA: 3'- -GUAGCUCUuucAGCCGCU-----------CGGCGGGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 57081 | 0.68 | 0.590075 |
Target: 5'- gCGUCGAGGAuGUCGGguCGAG-CGCCa- -3' miRNA: 3'- -GUAGCUCUUuCAGCC--GCUCgGCGGgc -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 58364 | 0.7 | 0.438715 |
Target: 5'- aCGUCGcaGAAGUCGuaGAGCUGCuCCGa -3' miRNA: 3'- -GUAGCucUUUCAGCcgCUCGGCG-GGC- -5' |
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23374 | 3' | -57 | NC_005259.1 | + | 58792 | 0.67 | 0.611308 |
Target: 5'- gGUCGAGgcGGugauugccUCGGCGGGCuCGCgCUGc -3' miRNA: 3'- gUAGCUCuuUC--------AGCCGCUCG-GCG-GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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