miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23374 5' -53.8 NC_005259.1 + 26096 0.77 0.322508
Target:  5'- gCCGAGAAGACCCCcGAGCaGACcgCc- -3'
miRNA:   3'- gGGCUCUUCUGGGG-CUUG-CUGuaGca -5'
23374 5' -53.8 NC_005259.1 + 49802 0.73 0.523209
Target:  5'- uCCCGAGAuagguGAgCCCGAcuuuaccaGCGAgGUCGg -3'
miRNA:   3'- -GGGCUCUu----CUgGGGCU--------UGCUgUAGCa -5'
23374 5' -53.8 NC_005259.1 + 3876 0.72 0.554502
Target:  5'- cCUCGAGcccACCCCGcagcGCGACAUCGUc -3'
miRNA:   3'- -GGGCUCuucUGGGGCu---UGCUGUAGCA- -5'
23374 5' -53.8 NC_005259.1 + 68746 0.71 0.62922
Target:  5'- gCCGAGcucGACCCCG-GCGACcUCGc -3'
miRNA:   3'- gGGCUCuu-CUGGGGCuUGCUGuAGCa -5'
23374 5' -53.8 NC_005259.1 + 18583 0.71 0.62922
Target:  5'- cCCCGAGcagaccGACCCCGAugucuACGACAgucCGc -3'
miRNA:   3'- -GGGCUCuu----CUGGGGCU-----UGCUGUa--GCa -5'
23374 5' -53.8 NC_005259.1 + 19363 0.71 0.633521
Target:  5'- gCCGGGAucaAGGCCCCGcugaucaccggccccAACGGCAgCGUc -3'
miRNA:   3'- gGGCUCU---UCUGGGGC---------------UUGCUGUaGCA- -5'
23374 5' -53.8 NC_005259.1 + 57980 0.7 0.69344
Target:  5'- gCCGGGAucguGACCCCGGucgagccaGCGACcauguugaggAUCGUc -3'
miRNA:   3'- gGGCUCUu---CUGGGGCU--------UGCUG----------UAGCA- -5'
23374 5' -53.8 NC_005259.1 + 7383 0.69 0.704005
Target:  5'- cCUCGGGAcAGACCCgCGAgacccgcaACGGCAUCc- -3'
miRNA:   3'- -GGGCUCU-UCUGGG-GCU--------UGCUGUAGca -5'
23374 5' -53.8 NC_005259.1 + 32802 0.69 0.714503
Target:  5'- gCCCGAGGucGAUCCCGAcgcacCGcCGUCGa -3'
miRNA:   3'- -GGGCUCUu-CUGGGGCUu----GCuGUAGCa -5'
23374 5' -53.8 NC_005259.1 + 16573 0.69 0.724923
Target:  5'- aCCGGGcAGAUCgCCGAG-GACAUCGc -3'
miRNA:   3'- gGGCUCuUCUGG-GGCUUgCUGUAGCa -5'
23374 5' -53.8 NC_005259.1 + 35313 0.69 0.735255
Target:  5'- aCCGAGGGcgguguguacgcGACCCCGcguagcGCGugAUCGa -3'
miRNA:   3'- gGGCUCUU------------CUGGGGCu-----UGCugUAGCa -5'
23374 5' -53.8 NC_005259.1 + 39242 0.69 0.745489
Target:  5'- cCUCGAcAAGGCCCgaGAuauagcuuuGCGGCAUCGUg -3'
miRNA:   3'- -GGGCUcUUCUGGGg-CU---------UGCUGUAGCA- -5'
23374 5' -53.8 NC_005259.1 + 43035 0.68 0.755612
Target:  5'- gCCGAGcAGGCCgCCGAgcagcgaaccgACGGgGUCGg -3'
miRNA:   3'- gGGCUCuUCUGG-GGCU-----------UGCUgUAGCa -5'
23374 5' -53.8 NC_005259.1 + 31371 0.68 0.755612
Target:  5'- aCCGAGAccgucccguAGcACCCCGgu-GACAUCGg -3'
miRNA:   3'- gGGCUCU---------UC-UGGGGCuugCUGUAGCa -5'
23374 5' -53.8 NC_005259.1 + 22386 0.68 0.765615
Target:  5'- gCCCG-GucGGCCUCGGcgACGugAUCGa -3'
miRNA:   3'- -GGGCuCuuCUGGGGCU--UGCugUAGCa -5'
23374 5' -53.8 NC_005259.1 + 16702 0.68 0.775488
Target:  5'- aCCGAGguGACCgCCGAGC-AgGUCGc -3'
miRNA:   3'- gGGCUCuuCUGG-GGCUUGcUgUAGCa -5'
23374 5' -53.8 NC_005259.1 + 39411 0.68 0.784252
Target:  5'- cCCCGAGGcggugccGGACaCCgucaaugaguCGAGCGugAUCGg -3'
miRNA:   3'- -GGGCUCU-------UCUG-GG----------GCUUGCugUAGCa -5'
23374 5' -53.8 NC_005259.1 + 31077 0.68 0.794798
Target:  5'- gUCGGcGAGGuuCCCGAGCG-CGUCGg -3'
miRNA:   3'- gGGCU-CUUCugGGGCUUGCuGUAGCa -5'
23374 5' -53.8 NC_005259.1 + 42525 0.68 0.804214
Target:  5'- gCCGucc-GGCCCCGAugGGCAcCGa -3'
miRNA:   3'- gGGCucuuCUGGGGCUugCUGUaGCa -5'
23374 5' -53.8 NC_005259.1 + 28739 0.67 0.831395
Target:  5'- gCCGAGGGuuacGCgCCCGAGCGugAgaUCGUc -3'
miRNA:   3'- gGGCUCUUc---UG-GGGCUUGCugU--AGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.