Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 24712 | 0.66 | 0.887453 |
Target: 5'- cCCCGAGAAaGCCUCG-GCGAUcaCGa -3' miRNA: 3'- -GGGCUCUUcUGGGGCuUGCUGuaGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 14599 | 0.66 | 0.887453 |
Target: 5'- aCCGAcaucGAGAcCCCCGGucuCGACAacUCGUu -3' miRNA: 3'- gGGCUc---UUCU-GGGGCUu--GCUGU--AGCA- -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 46543 | 0.66 | 0.885286 |
Target: 5'- gCCGAGAucuGGuCgCCGAccgcgccuauggucGCGGCGUCGa -3' miRNA: 3'- gGGCUCU---UCuGgGGCU--------------UGCUGUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 13692 | 0.66 | 0.87259 |
Target: 5'- aCCCGuggccGGucGACCCCGccuCGACAcCGa -3' miRNA: 3'- -GGGC-----UCuuCUGGGGCuu-GCUGUaGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 19446 | 0.66 | 0.87259 |
Target: 5'- cCCCGAGGcugucaucgAGACCgCCGuGCG-CAUCc- -3' miRNA: 3'- -GGGCUCU---------UCUGG-GGCuUGCuGUAGca -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 20568 | 0.66 | 0.87259 |
Target: 5'- cCCCGAGAucaucgAGGCauacgaCCGGugGAaGUCGg -3' miRNA: 3'- -GGGCUCU------UCUGg-----GGCUugCUgUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 56710 | 0.66 | 0.864799 |
Target: 5'- gCCaCGAuGguGuCCCCGAGCG-CGUCGa -3' miRNA: 3'- -GG-GCU-CuuCuGGGGCUUGCuGUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 14200 | 0.66 | 0.856777 |
Target: 5'- cCCCGAGcAGGCcgggaucaacuaCCCGG-CGcGCGUCGUg -3' miRNA: 3'- -GGGCUCuUCUG------------GGGCUuGC-UGUAGCA- -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 2129 | 0.67 | 0.84853 |
Target: 5'- gCCGAGGucacgcAGACCCgcaCGGugcuggccaGCGGCGUCGa -3' miRNA: 3'- gGGCUCU------UCUGGG---GCU---------UGCUGUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 13745 | 0.67 | 0.847693 |
Target: 5'- cCCgCGAGAuaugccaAGACCUCGccGACGACGuguUCGa -3' miRNA: 3'- -GG-GCUCU-------UCUGGGGC--UUGCUGU---AGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 13582 | 0.67 | 0.840067 |
Target: 5'- aCCCGAGGAcGACCCC--ACGu--UCGa -3' miRNA: 3'- -GGGCUCUU-CUGGGGcuUGCuguAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 10782 | 0.67 | 0.840067 |
Target: 5'- aUCGAGGuGGGCCgCGAGCGcaAUGUCGUa -3' miRNA: 3'- gGGCUCU-UCUGGgGCUUGC--UGUAGCA- -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 28739 | 0.67 | 0.831395 |
Target: 5'- gCCGAGGGuuacGCgCCCGAGCGugAgaUCGUc -3' miRNA: 3'- gGGCUCUUc---UG-GGGCUUGCugU--AGCA- -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 39024 | 0.67 | 0.831395 |
Target: 5'- aCCCGAGAuccGuuCCUGcGCGAuCAUCGg -3' miRNA: 3'- -GGGCUCUu--CugGGGCuUGCU-GUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 42525 | 0.68 | 0.804214 |
Target: 5'- gCCGucc-GGCCCCGAugGGCAcCGa -3' miRNA: 3'- gGGCucuuCUGGGGCUugCUGUaGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 31077 | 0.68 | 0.794798 |
Target: 5'- gUCGGcGAGGuuCCCGAGCG-CGUCGg -3' miRNA: 3'- gGGCU-CUUCugGGGCUUGCuGUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 39411 | 0.68 | 0.784252 |
Target: 5'- cCCCGAGGcggugccGGACaCCgucaaugaguCGAGCGugAUCGg -3' miRNA: 3'- -GGGCUCU-------UCUG-GG----------GCUUGCugUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 16702 | 0.68 | 0.775488 |
Target: 5'- aCCGAGguGACCgCCGAGC-AgGUCGc -3' miRNA: 3'- gGGCUCuuCUGG-GGCUUGcUgUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 22386 | 0.68 | 0.765615 |
Target: 5'- gCCCG-GucGGCCUCGGcgACGugAUCGa -3' miRNA: 3'- -GGGCuCuuCUGGGGCU--UGCugUAGCa -5' |
|||||||
23374 | 5' | -53.8 | NC_005259.1 | + | 43035 | 0.68 | 0.755612 |
Target: 5'- gCCGAGcAGGCCgCCGAgcagcgaaccgACGGgGUCGg -3' miRNA: 3'- gGGCUCuUCUGG-GGCU-----------UGCUgUAGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home