miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 35643 0.75 0.151721
Target:  5'- cCGCCGCUGCCGCUgGCGAgGGUGg--- -3'
miRNA:   3'- -GCGGCGACGGCGG-UGCUgUCGCaucc -5'
23376 5' -60 NC_005259.1 + 35881 0.66 0.539034
Target:  5'- aGCCGCcGCCGaggcagaCCACGGCGagccauucugcguuGCGcGGGa -3'
miRNA:   3'- gCGGCGaCGGC-------GGUGCUGU--------------CGCaUCC- -5'
23376 5' -60 NC_005259.1 + 36623 0.66 0.563512
Target:  5'- uGCCGCccgcGCCGCCcgcaaggcccGCGAuCAGCGa--- -3'
miRNA:   3'- gCGGCGa---CGGCGG----------UGCU-GUCGCaucc -5'
23376 5' -60 NC_005259.1 + 36775 0.66 0.573801
Target:  5'- gGCgCGUUGCCGCCGuccUGACcgcucGCGUcGGc -3'
miRNA:   3'- gCG-GCGACGGCGGU---GCUGu----CGCAuCC- -5'
23376 5' -60 NC_005259.1 + 37215 0.69 0.400587
Target:  5'- cCGCCGCcGCCGCCGgGGCgcuGGCccGUGccGGa -3'
miRNA:   3'- -GCGGCGaCGGCGGUgCUG---UCG--CAU--CC- -5'
23376 5' -60 NC_005259.1 + 37665 0.74 0.17723
Target:  5'- cCGCCGgUGCCGCCACGguuGGUGUAu- -3'
miRNA:   3'- -GCGGCgACGGCGGUGCug-UCGCAUcc -5'
23376 5' -60 NC_005259.1 + 38726 0.73 0.22823
Target:  5'- -aCCGCUGCCGCCGuacCGGCGGUGg--- -3'
miRNA:   3'- gcGGCGACGGCGGU---GCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 38951 0.74 0.172728
Target:  5'- uGCCGCUGCCGCCgagagccugcACGAUGGCa---- -3'
miRNA:   3'- gCGGCGACGGCGG----------UGCUGUCGcaucc -5'
23376 5' -60 NC_005259.1 + 41706 0.7 0.312443
Target:  5'- gGCaUGCaGCCGCCGCauaccGGCGGCGgggAGGa -3'
miRNA:   3'- gCG-GCGaCGGCGGUG-----CUGUCGCa--UCC- -5'
23376 5' -60 NC_005259.1 + 42494 0.68 0.454894
Target:  5'- aGCCGUgacCCGUC-CGGCGGUGUGGc -3'
miRNA:   3'- gCGGCGac-GGCGGuGCUGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 43031 0.68 0.42723
Target:  5'- uGCCGCcgagcagGCCGCCGagcagcgaacCGACGGgGUcGGu -3'
miRNA:   3'- gCGGCGa------CGGCGGU----------GCUGUCgCAuCC- -5'
23376 5' -60 NC_005259.1 + 44239 0.67 0.464329
Target:  5'- cCGCCGC-GCCGCCcgcgcGCGAgaaguCGGCGacaucgAGGc -3'
miRNA:   3'- -GCGGCGaCGGCGG-----UGCU-----GUCGCa-----UCC- -5'
23376 5' -60 NC_005259.1 + 44406 0.66 0.563512
Target:  5'- aCGUCGgUGcCCGCCugacCGGCAGCGc--- -3'
miRNA:   3'- -GCGGCgAC-GGCGGu---GCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 44650 0.7 0.341925
Target:  5'- uGCCGCcGCCcgacucgaacGCCACaccguugGGCAGCGUGGc -3'
miRNA:   3'- gCGGCGaCGG----------CGGUG-------CUGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 45314 0.7 0.319815
Target:  5'- aCGCCGagGCCGCCGcCGAacuGCGUGGc -3'
miRNA:   3'- -GCGGCgaCGGCGGU-GCUgu-CGCAUCc -5'
23376 5' -60 NC_005259.1 + 45345 0.72 0.245788
Target:  5'- gCGCCGCcuggGCCGCCGCG-UAGuCGacgGGGu -3'
miRNA:   3'- -GCGGCGa---CGGCGGUGCuGUC-GCa--UCC- -5'
23376 5' -60 NC_005259.1 + 45401 0.68 0.430861
Target:  5'- uCGCCGCcgagcgcgcugaugGCCGCCGCcGCuGCcucGUAGGc -3'
miRNA:   3'- -GCGGCGa-------------CGGCGGUGcUGuCG---CAUCC- -5'
23376 5' -60 NC_005259.1 + 45505 0.66 0.553273
Target:  5'- gGUCGCUGUgGCCaccGCGcCGGUGUuGGc -3'
miRNA:   3'- gCGGCGACGgCGG---UGCuGUCGCAuCC- -5'
23376 5' -60 NC_005259.1 + 45644 0.7 0.312443
Target:  5'- gCGCCGgUGCCGCCGUGaACAccgccguccGCGUAGu -3'
miRNA:   3'- -GCGGCgACGGCGGUGC-UGU---------CGCAUCc -5'
23376 5' -60 NC_005259.1 + 46692 0.66 0.522917
Target:  5'- aGCCGCcGCCGCgucccuCGACGcGCGUGc- -3'
miRNA:   3'- gCGGCGaCGGCGgu----GCUGU-CGCAUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.