miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 19557 0.68 0.436341
Target:  5'- uGcCCGCaGCCGUCGgGACAGCGc--- -3'
miRNA:   3'- gC-GGCGaCGGCGGUgCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 19838 0.77 0.104714
Target:  5'- uCGCgGCUGCUGCCGCGcuCGGUGUGGc -3'
miRNA:   3'- -GCGgCGACGGCGGUGCu-GUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 19954 0.68 0.436341
Target:  5'- gCGuCCGCaacgGCgGCU-CGGCGGUGUGGGu -3'
miRNA:   3'- -GC-GGCGa---CGgCGGuGCUGUCGCAUCC- -5'
23376 5' -60 NC_005259.1 + 20127 0.66 0.573801
Target:  5'- cCGCacugGCUGCCGUCGCGAugaCGGCa---- -3'
miRNA:   3'- -GCGg---CGACGGCGGUGCU---GUCGcaucc -5'
23376 5' -60 NC_005259.1 + 25920 0.66 0.563512
Target:  5'- aGCCGCcGCCGCCGguccgGugAGCGc--- -3'
miRNA:   3'- gCGGCGaCGGCGGUg----CugUCGCaucc -5'
23376 5' -60 NC_005259.1 + 26047 0.66 0.522917
Target:  5'- gCGCCGCcggguuggccaUGCCGCCGCcgaGCAGUcccccgAGGc -3'
miRNA:   3'- -GCGGCG-----------ACGGCGGUGc--UGUCGca----UCC- -5'
23376 5' -60 NC_005259.1 + 26280 0.75 0.159831
Target:  5'- uCGCCGgUGCCGCCcuCGACGG-GUAcGGg -3'
miRNA:   3'- -GCGGCgACGGCGGu-GCUGUCgCAU-CC- -5'
23376 5' -60 NC_005259.1 + 26497 0.66 0.54309
Target:  5'- aCGCCGCgagcucGCCGCC-CGGCgagaagAGCGcGGu -3'
miRNA:   3'- -GCGGCGa-----CGGCGGuGCUG------UCGCaUCc -5'
23376 5' -60 NC_005259.1 + 26947 0.73 0.204923
Target:  5'- aCGCCGCUGCuggaacgugcgcagCGCCGugccgaacuCGGCGGUGUAGa -3'
miRNA:   3'- -GCGGCGACG--------------GCGGU---------GCUGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 27276 0.71 0.28425
Target:  5'- aCGCCGCcuugaGCCGCCGCuGCAcGCGccGGa -3'
miRNA:   3'- -GCGGCGa----CGGCGGUGcUGU-CGCauCC- -5'
23376 5' -60 NC_005259.1 + 27674 0.67 0.493225
Target:  5'- aGCCauuuGUUGCgCGaCCACGAC-GCGUAGc -3'
miRNA:   3'- gCGG----CGACG-GC-GGUGCUGuCGCAUCc -5'
23376 5' -60 NC_005259.1 + 28064 0.68 0.436341
Target:  5'- gCGaCCcCUGCCGCCAC-ACGGUG-GGGu -3'
miRNA:   3'- -GC-GGcGACGGCGGUGcUGUCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 28221 0.71 0.270925
Target:  5'- gGUCG-UGCCGCCAcCGuCGGCGgcGGg -3'
miRNA:   3'- gCGGCgACGGCGGU-GCuGUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 28296 0.72 0.264453
Target:  5'- gGCCacGgUGCCGCCcuGCG-CAGCGUAGa -3'
miRNA:   3'- gCGG--CgACGGCGG--UGCuGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 29929 0.7 0.319815
Target:  5'- uCGaCGCgugGCCGCCACGcggcccggucGCGGCugGUGGGg -3'
miRNA:   3'- -GCgGCGa--CGGCGGUGC----------UGUCG--CAUCC- -5'
23376 5' -60 NC_005259.1 + 30173 0.66 0.573801
Target:  5'- gGCCGCcacaGCCGCC-CGcACAGCa---- -3'
miRNA:   3'- gCGGCGa---CGGCGGuGC-UGUCGcaucc -5'
23376 5' -60 NC_005259.1 + 32549 0.72 0.239814
Target:  5'- uGCUGUUgGCCGCCcCGGCgAGCGcGGGg -3'
miRNA:   3'- gCGGCGA-CGGCGGuGCUG-UCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 34433 0.7 0.350596
Target:  5'- aCGCCccucgaugaGCUGCCGaCCG-GGCAGCGUGu- -3'
miRNA:   3'- -GCGG---------CGACGGC-GGUgCUGUCGCAUcc -5'
23376 5' -60 NC_005259.1 + 34548 0.68 0.436341
Target:  5'- aGCCucaGCuUGCCGUCGgggcCGACGGCG-AGGu -3'
miRNA:   3'- gCGG---CG-ACGGCGGU----GCUGUCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 35202 0.68 0.436341
Target:  5'- -aCCG-UGCCGCCugaGGCGGCG-AGGa -3'
miRNA:   3'- gcGGCgACGGCGGug-CUGUCGCaUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.