miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 20127 0.66 0.573801
Target:  5'- cCGCacugGCUGCCGUCGCGAugaCGGCa---- -3'
miRNA:   3'- -GCGg---CGACGGCGGUGCU---GUCGcaucc -5'
23376 5' -60 NC_005259.1 + 30173 0.66 0.573801
Target:  5'- gGCCGCcacaGCCGCC-CGcACAGCa---- -3'
miRNA:   3'- gCGGCGa---CGGCGGuGC-UGUCGcaucc -5'
23376 5' -60 NC_005259.1 + 50739 0.66 0.552252
Target:  5'- aG-CGCUuccucaaGCCGCCACG-CGGUGUcGGa -3'
miRNA:   3'- gCgGCGA-------CGGCGGUGCuGUCGCAuCC- -5'
23376 5' -60 NC_005259.1 + 11542 0.67 0.50304
Target:  5'- aGCCGUUGCCGC-ACGucaGGCGg--- -3'
miRNA:   3'- gCGGCGACGGCGgUGCug-UCGCaucc -5'
23376 5' -60 NC_005259.1 + 13420 0.67 0.464329
Target:  5'- gGCCGgggucGCCGCCGgGGCcGCGcUAGGc -3'
miRNA:   3'- gCGGCga---CGGCGGUgCUGuCGC-AUCC- -5'
23376 5' -60 NC_005259.1 + 15301 0.67 0.464329
Target:  5'- cCGCCGaccucGCCGCCcacggucuCGACGGCGguacuGGu -3'
miRNA:   3'- -GCGGCga---CGGCGGu-------GCUGUCGCau---CC- -5'
23376 5' -60 NC_005259.1 + 44239 0.67 0.464329
Target:  5'- cCGCCGC-GCCGCCcgcgcGCGAgaaguCGGCGacaucgAGGc -3'
miRNA:   3'- -GCGGCGaCGGCGG-----UGCU-----GUCGCa-----UCC- -5'
23376 5' -60 NC_005259.1 + 47967 0.67 0.473865
Target:  5'- cCGCCGC-GCCGCCcGCGaauaugccggGCAGCGc--- -3'
miRNA:   3'- -GCGGCGaCGGCGG-UGC----------UGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 11447 0.67 0.484466
Target:  5'- cCGCuCGCUGCCGCCggugccuaucgucucGCagaucgaguagagaGACaaguagcugAGCGUAGGu -3'
miRNA:   3'- -GCG-GCGACGGCGG---------------UG--------------CUG---------UCGCAUCC- -5'
23376 5' -60 NC_005259.1 + 27674 0.67 0.493225
Target:  5'- aGCCauuuGUUGCgCGaCCACGAC-GCGUAGc -3'
miRNA:   3'- gCGG----CGACG-GC-GGUGCUGuCGCAUCc -5'
23376 5' -60 NC_005259.1 + 56887 0.67 0.493225
Target:  5'- aGCCGa--CCGCCAaucGCAGCGUGGc -3'
miRNA:   3'- gCGGCgacGGCGGUgc-UGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 59381 0.67 0.50304
Target:  5'- aCGCCGCaccgUGCCuCCGCGcGCgAGCGUGa- -3'
miRNA:   3'- -GCGGCG----ACGGcGGUGC-UG-UCGCAUcc -5'
23376 5' -60 NC_005259.1 + 47569 0.68 0.436341
Target:  5'- uCGCgCGCUGCUGUCccuCGGCGGUGUu-- -3'
miRNA:   3'- -GCG-GCGACGGCGGu--GCUGUCGCAucc -5'
23376 5' -60 NC_005259.1 + 42494 0.68 0.454894
Target:  5'- aGCCGUgacCCGUC-CGGCGGUGUGGc -3'
miRNA:   3'- gCGGCGac-GGCGGuGCUGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 56698 0.68 0.454894
Target:  5'- gGCUGCgagGUgGCCACGAUGGUGUc-- -3'
miRNA:   3'- gCGGCGa--CGgCGGUGCUGUCGCAucc -5'
23376 5' -60 NC_005259.1 + 928 0.68 0.436341
Target:  5'- -cCUGCUGCUG-CGCGACAGCGg--- -3'
miRNA:   3'- gcGGCGACGGCgGUGCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 34548 0.68 0.436341
Target:  5'- aGCCucaGCuUGCCGUCGgggcCGACGGCG-AGGu -3'
miRNA:   3'- gCGG---CG-ACGGCGGU----GCUGUCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 19954 0.68 0.436341
Target:  5'- gCGuCCGCaacgGCgGCU-CGGCGGUGUGGGu -3'
miRNA:   3'- -GC-GGCGa---CGgCGGuGCUGUCGCAUCC- -5'
23376 5' -60 NC_005259.1 + 35202 0.68 0.436341
Target:  5'- -aCCG-UGCCGCCugaGGCGGCG-AGGa -3'
miRNA:   3'- gcGGCgACGGCGGug-CUGUCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 28064 0.68 0.436341
Target:  5'- gCGaCCcCUGCCGCCAC-ACGGUG-GGGu -3'
miRNA:   3'- -GC-GGcGACGGCGGUGcUGUCGCaUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.