miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 44650 0.7 0.341925
Target:  5'- uGCCGCcGCCcgacucgaacGCCACaccguugGGCAGCGUGGc -3'
miRNA:   3'- gCGGCGaCGG----------CGGUG-------CUGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 8351 0.7 0.334947
Target:  5'- aCGCUGCUGCCGgUAuCGcuCGGCGgcGGc -3'
miRNA:   3'- -GCGGCGACGGCgGU-GCu-GUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 58478 0.7 0.327316
Target:  5'- gCGUgGCUGUCGCCgACGACAucgaccucGCGgucUAGGg -3'
miRNA:   3'- -GCGgCGACGGCGG-UGCUGU--------CGC---AUCC- -5'
23376 5' -60 NC_005259.1 + 45314 0.7 0.319815
Target:  5'- aCGCCGagGCCGCCGcCGAacuGCGUGGc -3'
miRNA:   3'- -GCGGCgaCGGCGGU-GCUgu-CGCAUCc -5'
23376 5' -60 NC_005259.1 + 29929 0.7 0.319815
Target:  5'- uCGaCGCgugGCCGCCACGcggcccggucGCGGCugGUGGGg -3'
miRNA:   3'- -GCgGCGa--CGGCGGUGC----------UGUCG--CAUCC- -5'
23376 5' -60 NC_005259.1 + 60298 0.7 0.312443
Target:  5'- uCGUCGgUGCgGCCACGgACGGCGaaaccGGGc -3'
miRNA:   3'- -GCGGCgACGgCGGUGC-UGUCGCa----UCC- -5'
23376 5' -60 NC_005259.1 + 45644 0.7 0.312443
Target:  5'- gCGCCGgUGCCGCCGUGaACAccgccguccGCGUAGu -3'
miRNA:   3'- -GCGGCgACGGCGGUGC-UGU---------CGCAUCc -5'
23376 5' -60 NC_005259.1 + 41706 0.7 0.312443
Target:  5'- gGCaUGCaGCCGCCGCauaccGGCGGCGgggAGGa -3'
miRNA:   3'- gCG-GCGaCGGCGGUG-----CUGUCGCa--UCC- -5'
23376 5' -60 NC_005259.1 + 37215 0.69 0.400587
Target:  5'- cCGCCGCcGCCGCCGgGGCgcuGGCccGUGccGGa -3'
miRNA:   3'- -GCGGCGaCGGCGGUgCUG---UCG--CAU--CC- -5'
23376 5' -60 NC_005259.1 + 17583 0.69 0.400587
Target:  5'- cCGaCGCUGCCGCgcaaccucggCGCGAUGaCGUGGGg -3'
miRNA:   3'- -GCgGCGACGGCG----------GUGCUGUcGCAUCC- -5'
23376 5' -60 NC_005259.1 + 7422 0.69 0.375028
Target:  5'- uCGCCGUcggcggUGCCcgcGCCGCauGGCAGCGccgAGGa -3'
miRNA:   3'- -GCGGCG------ACGG---CGGUG--CUGUCGCa--UCC- -5'
23376 5' -60 NC_005259.1 + 34548 0.68 0.436341
Target:  5'- aGCCucaGCuUGCCGUCGgggcCGACGGCG-AGGu -3'
miRNA:   3'- gCGG---CG-ACGGCGGU----GCUGUCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 19954 0.68 0.436341
Target:  5'- gCGuCCGCaacgGCgGCU-CGGCGGUGUGGGu -3'
miRNA:   3'- -GC-GGCGa---CGgCGGuGCUGUCGCAUCC- -5'
23376 5' -60 NC_005259.1 + 47569 0.68 0.436341
Target:  5'- uCGCgCGCUGCUGUCccuCGGCGGUGUu-- -3'
miRNA:   3'- -GCG-GCGACGGCGGu--GCUGUCGCAucc -5'
23376 5' -60 NC_005259.1 + 35202 0.68 0.436341
Target:  5'- -aCCG-UGCCGCCugaGGCGGCG-AGGa -3'
miRNA:   3'- gcGGCgACGGCGGug-CUGUCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 28064 0.68 0.436341
Target:  5'- gCGaCCcCUGCCGCCAC-ACGGUG-GGGu -3'
miRNA:   3'- -GC-GGcGACGGCGGUGcUGUCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 19557 0.68 0.436341
Target:  5'- uGcCCGCaGCCGUCGgGACAGCGc--- -3'
miRNA:   3'- gC-GGCGaCGGCGGUgCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 45401 0.68 0.430861
Target:  5'- uCGCCGCcgagcgcgcugaugGCCGCCGCcGCuGCcucGUAGGc -3'
miRNA:   3'- -GCGGCGa-------------CGGCGGUGcUGuCG---CAUCC- -5'
23376 5' -60 NC_005259.1 + 43031 0.68 0.42723
Target:  5'- uGCCGCcgagcagGCCGCCGagcagcgaacCGACGGgGUcGGu -3'
miRNA:   3'- gCGGCGa------CGGCGGU----------GCUGUCgCAuCC- -5'
23376 5' -60 NC_005259.1 + 928 0.68 0.436341
Target:  5'- -cCUGCUGCUG-CGCGACAGCGg--- -3'
miRNA:   3'- gcGGCGACGGCgGUGCUGUCGCaucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.