miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 60143 0.66 0.54309
Target:  5'- gCGCgGCcuugGCCGCCGCcuCAGCGgccucacGGGc -3'
miRNA:   3'- -GCGgCGa---CGGCGGUGcuGUCGCa------UCC- -5'
23376 5' -60 NC_005259.1 + 44406 0.66 0.563512
Target:  5'- aCGUCGgUGcCCGCCugacCGGCAGCGc--- -3'
miRNA:   3'- -GCGGCgAC-GGCGGu---GCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 3092 0.66 0.557362
Target:  5'- aGCCGCgcagcgaugagcggGCgGCCauugcGCGGCAcCGUGGGc -3'
miRNA:   3'- gCGGCGa-------------CGgCGG-----UGCUGUcGCAUCC- -5'
23376 5' -60 NC_005259.1 + 54621 0.66 0.54309
Target:  5'- uGCUGauCUGCCGCCcacGCGACAcCG-AGGc -3'
miRNA:   3'- gCGGC--GACGGCGG---UGCUGUcGCaUCC- -5'
23376 5' -60 NC_005259.1 + 12509 0.66 0.54309
Target:  5'- aGCCGCUggGCCGCU-CGGCuaccCGUAGa -3'
miRNA:   3'- gCGGCGA--CGGCGGuGCUGuc--GCAUCc -5'
23376 5' -60 NC_005259.1 + 50739 0.66 0.552252
Target:  5'- aG-CGCUuccucaaGCCGCCACG-CGGUGUcGGa -3'
miRNA:   3'- gCgGCGA-------CGGCGGUGCuGUCGCAuCC- -5'
23376 5' -60 NC_005259.1 + 46692 0.66 0.522917
Target:  5'- aGCCGCcGCCGCgucccuCGACGcGCGUGc- -3'
miRNA:   3'- gCGGCGaCGGCGgu----GCUGU-CGCAUcc -5'
23376 5' -60 NC_005259.1 + 35881 0.66 0.539034
Target:  5'- aGCCGCcGCCGaggcagaCCACGGCGagccauucugcguuGCGcGGGa -3'
miRNA:   3'- gCGGCGaCGGC-------GGUGCUGU--------------CGCaUCC- -5'
23376 5' -60 NC_005259.1 + 26497 0.66 0.54309
Target:  5'- aCGCCGCgagcucGCCGCC-CGGCgagaagAGCGcGGu -3'
miRNA:   3'- -GCGGCGa-----CGGCGGuGCUG------UCGCaUCc -5'
23376 5' -60 NC_005259.1 + 67145 0.66 0.54309
Target:  5'- cCGCUGUgaGCCGCUuguCGAUGGUGgcGGc -3'
miRNA:   3'- -GCGGCGa-CGGCGGu--GCUGUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 5440 0.66 0.53297
Target:  5'- gCGcCCGCUGCCGCCGacaGAUcGCa---- -3'
miRNA:   3'- -GC-GGCGACGGCGGUg--CUGuCGcaucc -5'
23376 5' -60 NC_005259.1 + 63142 0.66 0.542075
Target:  5'- aGCCGCUGUccuCGcCCACGuugagcagccgccGCAGCGccgccgAGGu -3'
miRNA:   3'- gCGGCGACG---GC-GGUGC-------------UGUCGCa-----UCC- -5'
23376 5' -60 NC_005259.1 + 36623 0.66 0.563512
Target:  5'- uGCCGCccgcGCCGCCcgcaaggcccGCGAuCAGCGa--- -3'
miRNA:   3'- gCGGCGa---CGGCGG----------UGCU-GUCGCaucc -5'
23376 5' -60 NC_005259.1 + 4279 0.66 0.563512
Target:  5'- gGCUGC-GCUGCCACGAgcacggacCGGCGg--- -3'
miRNA:   3'- gCGGCGaCGGCGGUGCU--------GUCGCaucc -5'
23376 5' -60 NC_005259.1 + 45505 0.66 0.553273
Target:  5'- gGUCGCUGUgGCCaccGCGcCGGUGUuGGc -3'
miRNA:   3'- gCGGCGACGgCGG---UGCuGUCGCAuCC- -5'
23376 5' -60 NC_005259.1 + 10571 0.66 0.53297
Target:  5'- -aUCGC-GCCGCCuCGACGGCGa--- -3'
miRNA:   3'- gcGGCGaCGGCGGuGCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 5697 0.66 0.573801
Target:  5'- uGCUGUgcucgUGCCGCCAaGGcCAGCGccGGa -3'
miRNA:   3'- gCGGCG-----ACGGCGGUgCU-GUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 6221 0.66 0.563512
Target:  5'- cCGCCGC-GCCGaCAcCGugAcCGUGGGc -3'
miRNA:   3'- -GCGGCGaCGGCgGU-GCugUcGCAUCC- -5'
23376 5' -60 NC_005259.1 + 26047 0.66 0.522917
Target:  5'- gCGCCGCcggguuggccaUGCCGCCGCcgaGCAGUcccccgAGGc -3'
miRNA:   3'- -GCGGCG-----------ACGGCGGUGc--UGUCGca----UCC- -5'
23376 5' -60 NC_005259.1 + 25920 0.66 0.563512
Target:  5'- aGCCGCcGCCGCCGguccgGugAGCGc--- -3'
miRNA:   3'- gCGGCGaCGGCGGUg----CugUCGCaucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.