miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 928 0.68 0.436341
Target:  5'- -cCUGCUGCUG-CGCGACAGCGg--- -3'
miRNA:   3'- gcGGCGACGGCgGUGCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 1840 0.7 0.345847
Target:  5'- uCGCCGCUGCCGCCgaggccgagaaagccGCcGCcGCGUuccguaagcAGGc -3'
miRNA:   3'- -GCGGCGACGGCGG---------------UGcUGuCGCA---------UCC- -5'
23376 5' -60 NC_005259.1 + 3092 0.66 0.557362
Target:  5'- aGCCGCgcagcgaugagcggGCgGCCauugcGCGGCAcCGUGGGc -3'
miRNA:   3'- gCGGCGa-------------CGgCGG-----UGCUGUcGCAUCC- -5'
23376 5' -60 NC_005259.1 + 4279 0.66 0.563512
Target:  5'- gGCUGC-GCUGCCACGAgcacggacCGGCGg--- -3'
miRNA:   3'- gCGGCGaCGGCGGUGCU--------GUCGCaucc -5'
23376 5' -60 NC_005259.1 + 5440 0.66 0.53297
Target:  5'- gCGcCCGCUGCCGCCGacaGAUcGCa---- -3'
miRNA:   3'- -GC-GGCGACGGCGGUg--CUGuCGcaucc -5'
23376 5' -60 NC_005259.1 + 5538 0.68 0.418232
Target:  5'- gGCUGCUcUCGCCcgaGGCcGCGUGGGg -3'
miRNA:   3'- gCGGCGAcGGCGGug-CUGuCGCAUCC- -5'
23376 5' -60 NC_005259.1 + 5697 0.66 0.573801
Target:  5'- uGCUGUgcucgUGCCGCCAaGGcCAGCGccGGa -3'
miRNA:   3'- gCGGCG-----ACGGCGGUgCU-GUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 6221 0.66 0.563512
Target:  5'- cCGCCGC-GCCGaCAcCGugAcCGUGGGc -3'
miRNA:   3'- -GCGGCGaCGGCgGU-GCugUcGCAUCC- -5'
23376 5' -60 NC_005259.1 + 7422 0.69 0.375028
Target:  5'- uCGCCGUcggcggUGCCcgcGCCGCauGGCAGCGccgAGGa -3'
miRNA:   3'- -GCGGCG------ACGG---CGGUG--CUGUCGCa--UCC- -5'
23376 5' -60 NC_005259.1 + 8351 0.7 0.334947
Target:  5'- aCGCUGCUGCCGgUAuCGcuCGGCGgcGGc -3'
miRNA:   3'- -GCGGCGACGGCgGU-GCu-GUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 8841 0.71 0.298088
Target:  5'- gCGCUGC-GCCGaCCACcACAGCGUGc- -3'
miRNA:   3'- -GCGGCGaCGGC-GGUGcUGUCGCAUcc -5'
23376 5' -60 NC_005259.1 + 10571 0.66 0.53297
Target:  5'- -aUCGC-GCCGCCuCGACGGCGa--- -3'
miRNA:   3'- gcGGCGaCGGCGGuGCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 11447 0.67 0.484466
Target:  5'- cCGCuCGCUGCCGCCggugccuaucgucucGCagaucgaguagagaGACaaguagcugAGCGUAGGu -3'
miRNA:   3'- -GCG-GCGACGGCGG---------------UG--------------CUG---------UCGCAUCC- -5'
23376 5' -60 NC_005259.1 + 11542 0.67 0.50304
Target:  5'- aGCCGUUGCCGC-ACGucaGGCGg--- -3'
miRNA:   3'- gCGGCGACGGCGgUGCug-UCGCaucc -5'
23376 5' -60 NC_005259.1 + 12509 0.66 0.54309
Target:  5'- aGCCGCUggGCCGCU-CGGCuaccCGUAGa -3'
miRNA:   3'- gCGGCGA--CGGCGGuGCUGuc--GCAUCc -5'
23376 5' -60 NC_005259.1 + 12811 0.7 0.350596
Target:  5'- uGUCGCgcGCaCGCgCGCGugAGgGUGGGg -3'
miRNA:   3'- gCGGCGa-CG-GCG-GUGCugUCgCAUCC- -5'
23376 5' -60 NC_005259.1 + 13420 0.67 0.464329
Target:  5'- gGCCGgggucGCCGCCGgGGCcGCGcUAGGc -3'
miRNA:   3'- gCGGCga---CGGCGGUgCUGuCGC-AUCC- -5'
23376 5' -60 NC_005259.1 + 15301 0.67 0.464329
Target:  5'- cCGCCGaccucGCCGCCcacggucuCGACGGCGguacuGGu -3'
miRNA:   3'- -GCGGCga---CGGCGGu-------GCUGUCGCau---CC- -5'
23376 5' -60 NC_005259.1 + 17583 0.69 0.400587
Target:  5'- cCGaCGCUGCCGCgcaaccucggCGCGAUGaCGUGGGg -3'
miRNA:   3'- -GCgGCGACGGCG----------GUGCUGUcGCAUCC- -5'
23376 5' -60 NC_005259.1 + 18852 0.71 0.291105
Target:  5'- uCGCCGgUGCCGUgcaACGguuGCGcGCGUGGGa -3'
miRNA:   3'- -GCGGCgACGGCGg--UGC---UGU-CGCAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.