miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 67207 0.86 0.024567
Target:  5'- uCGCCGCugucggcggggucgaUGCCGaCCACGGCGGUGUAGGg -3'
miRNA:   3'- -GCGGCG---------------ACGGC-GGUGCUGUCGCAUCC- -5'
23376 5' -60 NC_005259.1 + 67145 0.66 0.54309
Target:  5'- cCGCUGUgaGCCGCUuguCGAUGGUGgcGGc -3'
miRNA:   3'- -GCGGCGa-CGGCGGu--GCUGUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 63142 0.66 0.542075
Target:  5'- aGCCGCUGUccuCGcCCACGuugagcagccgccGCAGCGccgccgAGGu -3'
miRNA:   3'- gCGGCGACG---GC-GGUGC-------------UGUCGCa-----UCC- -5'
23376 5' -60 NC_005259.1 + 60298 0.7 0.312443
Target:  5'- uCGUCGgUGCgGCCACGgACGGCGaaaccGGGc -3'
miRNA:   3'- -GCGGCgACGgCGGUGC-UGUCGCa----UCC- -5'
23376 5' -60 NC_005259.1 + 60143 0.66 0.54309
Target:  5'- gCGCgGCcuugGCCGCCGCcuCAGCGgccucacGGGc -3'
miRNA:   3'- -GCGgCGa---CGGCGGUGcuGUCGCa------UCC- -5'
23376 5' -60 NC_005259.1 + 59381 0.67 0.50304
Target:  5'- aCGCCGCaccgUGCCuCCGCGcGCgAGCGUGa- -3'
miRNA:   3'- -GCGGCG----ACGGcGGUGC-UG-UCGCAUcc -5'
23376 5' -60 NC_005259.1 + 59299 0.71 0.277523
Target:  5'- cCuaCGCUGUCGUgGCGGCAGCGgcGa -3'
miRNA:   3'- -GcgGCGACGGCGgUGCUGUCGCauCc -5'
23376 5' -60 NC_005259.1 + 58478 0.7 0.327316
Target:  5'- gCGUgGCUGUCGCCgACGACAucgaccucGCGgucUAGGg -3'
miRNA:   3'- -GCGgCGACGGCGG-UGCUGU--------CGC---AUCC- -5'
23376 5' -60 NC_005259.1 + 56887 0.67 0.493225
Target:  5'- aGCCGa--CCGCCAaucGCAGCGUGGc -3'
miRNA:   3'- gCGGCgacGGCGGUgc-UGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 56698 0.68 0.454894
Target:  5'- gGCUGCgagGUgGCCACGAUGGUGUc-- -3'
miRNA:   3'- gCGGCGa--CGgCGGUGCUGUCGCAucc -5'
23376 5' -60 NC_005259.1 + 54621 0.66 0.54309
Target:  5'- uGCUGauCUGCCGCCcacGCGACAcCG-AGGc -3'
miRNA:   3'- gCGGC--GACGGCGG---UGCUGUcGCaUCC- -5'
23376 5' -60 NC_005259.1 + 50739 0.66 0.552252
Target:  5'- aG-CGCUuccucaaGCCGCCACG-CGGUGUcGGa -3'
miRNA:   3'- gCgGCGA-------CGGCGGUGCuGUCGCAuCC- -5'
23376 5' -60 NC_005259.1 + 49243 0.77 0.122902
Target:  5'- uCGaCCGCUGCCGUCACGAUuGCGUu-- -3'
miRNA:   3'- -GC-GGCGACGGCGGUGCUGuCGCAucc -5'
23376 5' -60 NC_005259.1 + 47967 0.67 0.473865
Target:  5'- cCGCCGC-GCCGCCcGCGaauaugccggGCAGCGc--- -3'
miRNA:   3'- -GCGGCGaCGGCGG-UGC----------UGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 47569 0.68 0.436341
Target:  5'- uCGCgCGCUGCUGUCccuCGGCGGUGUu-- -3'
miRNA:   3'- -GCG-GCGACGGCGGu--GCUGUCGCAucc -5'
23376 5' -60 NC_005259.1 + 46692 0.66 0.522917
Target:  5'- aGCCGCcGCCGCgucccuCGACGcGCGUGc- -3'
miRNA:   3'- gCGGCGaCGGCGgu----GCUGU-CGCAUcc -5'
23376 5' -60 NC_005259.1 + 45644 0.7 0.312443
Target:  5'- gCGCCGgUGCCGCCGUGaACAccgccguccGCGUAGu -3'
miRNA:   3'- -GCGGCgACGGCGGUGC-UGU---------CGCAUCc -5'
23376 5' -60 NC_005259.1 + 45505 0.66 0.553273
Target:  5'- gGUCGCUGUgGCCaccGCGcCGGUGUuGGc -3'
miRNA:   3'- gCGGCGACGgCGG---UGCuGUCGCAuCC- -5'
23376 5' -60 NC_005259.1 + 45401 0.68 0.430861
Target:  5'- uCGCCGCcgagcgcgcugaugGCCGCCGCcGCuGCcucGUAGGc -3'
miRNA:   3'- -GCGGCGa-------------CGGCGGUGcUGuCG---CAUCC- -5'
23376 5' -60 NC_005259.1 + 45345 0.72 0.245788
Target:  5'- gCGCCGCcuggGCCGCCGCG-UAGuCGacgGGGu -3'
miRNA:   3'- -GCGGCGa---CGGCGGUGCuGUC-GCa--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.