miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23377 5' -59.5 NC_005259.1 + 63616 0.74 0.187038
Target:  5'- cGGCCACCGacGCCUGAuagaUCaucguggcgagcugcUCGCUGgCCGg -3'
miRNA:   3'- -CCGGUGGC--UGGACU----AG---------------AGCGACgGGC- -5'
23377 5' -59.5 NC_005259.1 + 1827 0.73 0.221123
Target:  5'- -cCCGCCGACCUGcUCgcCGCUGCCg- -3'
miRNA:   3'- ccGGUGGCUGGACuAGa-GCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 22443 0.73 0.232451
Target:  5'- gGGCCAUCGACuCUGGcuacCUCGUgcGCCCGc -3'
miRNA:   3'- -CCGGUGGCUG-GACUa---GAGCGa-CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 30362 0.73 0.232451
Target:  5'- uGGaCGCCGAUCUGcc--CGCUGCCCGg -3'
miRNA:   3'- -CCgGUGGCUGGACuagaGCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 53524 0.73 0.238296
Target:  5'- uGGCCAgCGGCacgGG-CUCGgUGCCCGg -3'
miRNA:   3'- -CCGGUgGCUGga-CUaGAGCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 46552 0.72 0.272664
Target:  5'- uGGUCGCCGACCgcgccuaUGGUCgcggcgucgaccgCGCcGCCCGa -3'
miRNA:   3'- -CCGGUGGCUGG-------ACUAGa------------GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 19059 0.72 0.275978
Target:  5'- cGCCACCGAUgUcGGUgUCGCgGUCCGg -3'
miRNA:   3'- cCGGUGGCUGgA-CUAgAGCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 42955 0.71 0.280671
Target:  5'- aGGCCGCCGuugucgaacgggauGCCgggGAUCaUCGUUGCCg- -3'
miRNA:   3'- -CCGGUGGC--------------UGGa--CUAG-AGCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 54758 0.71 0.289556
Target:  5'- aGGCCGCCGACCcaaacCUUGCuuaUGCCUGc -3'
miRNA:   3'- -CCGGUGGCUGGacua-GAGCG---ACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 61956 0.71 0.289556
Target:  5'- gGGCCACCGcaGCCUcacGcgC-CGCUGCCuCGa -3'
miRNA:   3'- -CCGGUGGC--UGGA---CuaGaGCGACGG-GC- -5'
23377 5' -59.5 NC_005259.1 + 56114 0.71 0.29654
Target:  5'- uGGCCACCGAaaCUGugugCGCUGCCgGu -3'
miRNA:   3'- -CCGGUGGCUg-GACuagaGCGACGGgC- -5'
23377 5' -59.5 NC_005259.1 + 56238 0.71 0.304372
Target:  5'- cGCCGCCGACCacguuggGAUCggcggccuugagcgcCGCcGCCCGg -3'
miRNA:   3'- cCGGUGGCUGGa------CUAGa--------------GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 67772 0.71 0.310897
Target:  5'- cGGCCACCGACCacgcggUGAcCUUGUUGgCaCCGc -3'
miRNA:   3'- -CCGGUGGCUGG------ACUaGAGCGAC-G-GGC- -5'
23377 5' -59.5 NC_005259.1 + 63679 0.7 0.325778
Target:  5'- cGGgCACCGgcgcGCCgggGAUCUgCGCcUGCCCa -3'
miRNA:   3'- -CCgGUGGC----UGGa--CUAGA-GCG-ACGGGc -5'
23377 5' -59.5 NC_005259.1 + 46948 0.7 0.333414
Target:  5'- cGCCGCCGACCgcguUGAgCUUGUUGgCCa -3'
miRNA:   3'- cCGGUGGCUGG----ACUaGAGCGACgGGc -5'
23377 5' -59.5 NC_005259.1 + 49101 0.7 0.341181
Target:  5'- uGGCCGCCcGCCggGAUCUcaagaCGCUGaucaCCGg -3'
miRNA:   3'- -CCGGUGGcUGGa-CUAGA-----GCGACg---GGC- -5'
23377 5' -59.5 NC_005259.1 + 9532 0.7 0.341181
Target:  5'- cGCCGCCGggucACCgGAga--GCUGCCCGg -3'
miRNA:   3'- cCGGUGGC----UGGaCUagagCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 40689 0.7 0.349077
Target:  5'- uGCuCACCGGCCcgaUGAUCggGgUGCCCGc -3'
miRNA:   3'- cCG-GUGGCUGG---ACUAGagCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 35709 0.7 0.352272
Target:  5'- gGGUCGCUGACgaGGUauccgcccgacgaccCggCGCUGCCCGg -3'
miRNA:   3'- -CCGGUGGCUGgaCUA---------------Ga-GCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 33133 0.69 0.381949
Target:  5'- aGCCGCCGcGCgUGAUCUUGCcguagaccGCCUGa -3'
miRNA:   3'- cCGGUGGC-UGgACUAGAGCGa-------CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.