miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23377 5' -59.5 NC_005259.1 + 1827 0.73 0.221123
Target:  5'- -cCCGCCGACCUGcUCgcCGCUGCCg- -3'
miRNA:   3'- ccGGUGGCUGGACuAGa-GCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 1888 0.66 0.562524
Target:  5'- aGGCCGCCGA---GAUCgcgcgaGCUGCCg- -3'
miRNA:   3'- -CCGGUGGCUggaCUAGag----CGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 3741 0.66 0.572851
Target:  5'- cGGUCGCaCGACCUaucaGGUCgacaGC-GCCCGc -3'
miRNA:   3'- -CCGGUG-GCUGGA----CUAGag--CGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 4503 0.68 0.444212
Target:  5'- cGCCACCGcGCCggGAguggCGCUGCgCGg -3'
miRNA:   3'- cCGGUGGC-UGGa-CUaga-GCGACGgGC- -5'
23377 5' -59.5 NC_005259.1 + 6931 0.67 0.482247
Target:  5'- cGCCGCCGcCUUGAggccgagCUCGCcGCCg- -3'
miRNA:   3'- cCGGUGGCuGGACUa------GAGCGaCGGgc -5'
23377 5' -59.5 NC_005259.1 + 7921 0.66 0.583222
Target:  5'- uGCCGCC--CUUGGUCUCGUggGCCUu -3'
miRNA:   3'- cCGGUGGcuGGACUAGAGCGa-CGGGc -5'
23377 5' -59.5 NC_005259.1 + 8176 0.67 0.521788
Target:  5'- aGGCUACCcccguGGCCUGccGUUUaCGC-GCCCGa -3'
miRNA:   3'- -CCGGUGG-----CUGGAC--UAGA-GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 9532 0.7 0.341181
Target:  5'- cGCCGCCGggucACCgGAga--GCUGCCCGg -3'
miRNA:   3'- cCGGUGGC----UGGaCUagagCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 9754 0.66 0.559436
Target:  5'- -uCCACCacagcgugauacgaGACCUGG-CUCGacuuCUGCCCGg -3'
miRNA:   3'- ccGGUGG--------------CUGGACUaGAGC----GACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 15425 0.66 0.552248
Target:  5'- uGCCACCaaGGCC-GAUCUCGaguauCUGgCCGa -3'
miRNA:   3'- cCGGUGG--CUGGaCUAGAGC-----GACgGGC- -5'
23377 5' -59.5 NC_005259.1 + 17086 0.67 0.498884
Target:  5'- aGGCCGCCGAUaUUGGgcugucgaucauguUCaUCGC-GCCCGa -3'
miRNA:   3'- -CCGGUGGCUG-GACU--------------AG-AGCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 18144 0.68 0.444212
Target:  5'- aGGCCAUgGACgaGAUCggGCUGaCgCCGg -3'
miRNA:   3'- -CCGGUGgCUGgaCUAGagCGAC-G-GGC- -5'
23377 5' -59.5 NC_005259.1 + 19059 0.72 0.275978
Target:  5'- cGCCACCGAUgUcGGUgUCGCgGUCCGg -3'
miRNA:   3'- cCGGUGGCUGgA-CUAgAGCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 22443 0.73 0.232451
Target:  5'- gGGCCAUCGACuCUGGcuacCUCGUgcGCCCGc -3'
miRNA:   3'- -CCGGUGGCUG-GACUa---GAGCGa-CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 22612 0.66 0.583222
Target:  5'- cGCCGCCGACCgccgcccGAUCaucuUCGCcGCgUCGg -3'
miRNA:   3'- cCGGUGGCUGGa------CUAG----AGCGaCG-GGC- -5'
23377 5' -59.5 NC_005259.1 + 23006 0.66 0.55738
Target:  5'- aGGUCACCGAggacggcucggucauCgaGAUCgaacccgacgacgaGCUGCCCGg -3'
miRNA:   3'- -CCGGUGGCU---------------GgaCUAGag------------CGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 28150 0.68 0.472586
Target:  5'- aGCUGcCCGGCCUcGAcg-CGCUGCCCu -3'
miRNA:   3'- cCGGU-GGCUGGA-CUagaGCGACGGGc -5'
23377 5' -59.5 NC_005259.1 + 28354 0.66 0.572851
Target:  5'- aGGCCACgGugCUG-----GCUGCCCc -3'
miRNA:   3'- -CCGGUGgCugGACuagagCGACGGGc -5'
23377 5' -59.5 NC_005259.1 + 29056 0.68 0.425836
Target:  5'- aGCCGCgagcgcgguauCGGCCcGAUCUgCGCUGCCa- -3'
miRNA:   3'- cCGGUG-----------GCUGGaCUAGA-GCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 29445 0.67 0.492002
Target:  5'- cGGCCucaGCCaGCgUGAcCUUGCcGCCCGg -3'
miRNA:   3'- -CCGG---UGGcUGgACUaGAGCGaCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.