miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23377 5' -59.5 NC_005259.1 + 15425 0.66 0.552248
Target:  5'- uGCCACCaaGGCC-GAUCUCGaguauCUGgCCGa -3'
miRNA:   3'- cCGGUGG--CUGGaCUAGAGC-----GACgGGC- -5'
23377 5' -59.5 NC_005259.1 + 37275 0.66 0.552248
Target:  5'- aGGCCGCCcggcagGACUUGcAUggCGgUGCCCGc -3'
miRNA:   3'- -CCGGUGG------CUGGAC-UAgaGCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 46298 0.66 0.542029
Target:  5'- gGGCCGCCGuGgCUGcguugUUCGCgGCCCc -3'
miRNA:   3'- -CCGGUGGC-UgGACua---GAGCGaCGGGc -5'
23377 5' -59.5 NC_005259.1 + 8176 0.67 0.521788
Target:  5'- aGGCUACCcccguGGCCUGccGUUUaCGC-GCCCGa -3'
miRNA:   3'- -CCGGUGG-----CUGGAC--UAGA-GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 45603 0.67 0.511777
Target:  5'- --gCACCGACagcucGGUCUCGaUGCCCGc -3'
miRNA:   3'- ccgGUGGCUGga---CUAGAGCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 53155 0.67 0.510781
Target:  5'- aGCCGCUacgccgaGGCC-GAUCUCGCcaccgccGCCCGu -3'
miRNA:   3'- cCGGUGG-------CUGGaCUAGAGCGa------CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 17086 0.67 0.498884
Target:  5'- aGGCCGCCGAUaUUGGgcugucgaucauguUCaUCGC-GCCCGa -3'
miRNA:   3'- -CCGGUGGCUG-GACU--------------AG-AGCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 35566 0.67 0.492002
Target:  5'- uGCCGCCGACCgccgaGAUCcCGUUGUagCUGa -3'
miRNA:   3'- cCGGUGGCUGGa----CUAGaGCGACG--GGC- -5'
23377 5' -59.5 NC_005259.1 + 29445 0.67 0.492002
Target:  5'- cGGCCucaGCCaGCgUGAcCUUGCcGCCCGg -3'
miRNA:   3'- -CCGG---UGGcUGgACUaGAGCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 37216 0.67 0.482247
Target:  5'- cGCCGCCGccGCCgGGg--CGCUgGCCCGu -3'
miRNA:   3'- cCGGUGGC--UGGaCUagaGCGA-CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 6931 0.67 0.482247
Target:  5'- cGCCGCCGcCUUGAggccgagCUCGCcGCCg- -3'
miRNA:   3'- cCGGUGGCuGGACUa------GAGCGaCGGgc -5'
23377 5' -59.5 NC_005259.1 + 63559 0.68 0.472586
Target:  5'- cGGCCACCGACgCgacgagcggGAUauaCGCcGCCUGg -3'
miRNA:   3'- -CCGGUGGCUG-Ga--------CUAga-GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 28150 0.68 0.472586
Target:  5'- aGCUGcCCGGCCUcGAcg-CGCUGCCCu -3'
miRNA:   3'- cCGGU-GGCUGGA-CUagaGCGACGGGc -5'
23377 5' -59.5 NC_005259.1 + 63793 0.68 0.463024
Target:  5'- uGGCCGCguuCUUGAUCUUGCgugugGUCCGc -3'
miRNA:   3'- -CCGGUGgcuGGACUAGAGCGa----CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 49679 0.68 0.463024
Target:  5'- cGGCCugguagUCGGCCUcGcgCUCGCUGUCgGu -3'
miRNA:   3'- -CCGGu-----GGCUGGA-CuaGAGCGACGGgC- -5'
23377 5' -59.5 NC_005259.1 + 4503 0.68 0.444212
Target:  5'- cGCCACCGcGCCggGAguggCGCUGCgCGg -3'
miRNA:   3'- cCGGUGGC-UGGa-CUaga-GCGACGgGC- -5'
23377 5' -59.5 NC_005259.1 + 36135 0.68 0.444212
Target:  5'- gGGCCGCCGGgCUG-UCcgUCGCcaugGCCaCGg -3'
miRNA:   3'- -CCGGUGGCUgGACuAG--AGCGa---CGG-GC- -5'
23377 5' -59.5 NC_005259.1 + 18144 0.68 0.444212
Target:  5'- aGGCCAUgGACgaGAUCggGCUGaCgCCGg -3'
miRNA:   3'- -CCGGUGgCUGgaCUAGagCGAC-G-GGC- -5'
23377 5' -59.5 NC_005259.1 + 56384 0.68 0.434967
Target:  5'- gGGCCGCguCGGCUgaucGUCUCGauggUGCCCGg -3'
miRNA:   3'- -CCGGUG--GCUGGac--UAGAGCg---ACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 43966 0.68 0.434967
Target:  5'- gGGCCGCCG-CCUGAcCgagggCGgUGCCg- -3'
miRNA:   3'- -CCGGUGGCuGGACUaGa----GCgACGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.