Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23377 | 5' | -59.5 | NC_005259.1 | + | 37275 | 0.66 | 0.552248 |
Target: 5'- aGGCCGCCcggcagGACUUGcAUggCGgUGCCCGc -3' miRNA: 3'- -CCGGUGG------CUGGAC-UAgaGCgACGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 55910 | 0.66 | 0.552248 |
Target: 5'- gGGUCGCUGGCCaGAccgCUgGuCUGCUCGg -3' miRNA: 3'- -CCGGUGGCUGGaCUa--GAgC-GACGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 46298 | 0.66 | 0.542029 |
Target: 5'- gGGCCGCCGuGgCUGcguugUUCGCgGCCCc -3' miRNA: 3'- -CCGGUGGC-UgGACua---GAGCGaCGGGc -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 8176 | 0.67 | 0.521788 |
Target: 5'- aGGCUACCcccguGGCCUGccGUUUaCGC-GCCCGa -3' miRNA: 3'- -CCGGUGG-----CUGGAC--UAGA-GCGaCGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 45603 | 0.67 | 0.511777 |
Target: 5'- --gCACCGACagcucGGUCUCGaUGCCCGc -3' miRNA: 3'- ccgGUGGCUGga---CUAGAGCgACGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 53155 | 0.67 | 0.510781 |
Target: 5'- aGCCGCUacgccgaGGCC-GAUCUCGCcaccgccGCCCGu -3' miRNA: 3'- cCGGUGG-------CUGGaCUAGAGCGa------CGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 17086 | 0.67 | 0.498884 |
Target: 5'- aGGCCGCCGAUaUUGGgcugucgaucauguUCaUCGC-GCCCGa -3' miRNA: 3'- -CCGGUGGCUG-GACU--------------AG-AGCGaCGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 35566 | 0.67 | 0.492002 |
Target: 5'- uGCCGCCGACCgccgaGAUCcCGUUGUagCUGa -3' miRNA: 3'- cCGGUGGCUGGa----CUAGaGCGACG--GGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 29445 | 0.67 | 0.492002 |
Target: 5'- cGGCCucaGCCaGCgUGAcCUUGCcGCCCGg -3' miRNA: 3'- -CCGG---UGGcUGgACUaGAGCGaCGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 37216 | 0.67 | 0.482247 |
Target: 5'- cGCCGCCGccGCCgGGg--CGCUgGCCCGu -3' miRNA: 3'- cCGGUGGC--UGGaCUagaGCGA-CGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 6931 | 0.67 | 0.482247 |
Target: 5'- cGCCGCCGcCUUGAggccgagCUCGCcGCCg- -3' miRNA: 3'- cCGGUGGCuGGACUa------GAGCGaCGGgc -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 63559 | 0.68 | 0.472586 |
Target: 5'- cGGCCACCGACgCgacgagcggGAUauaCGCcGCCUGg -3' miRNA: 3'- -CCGGUGGCUG-Ga--------CUAga-GCGaCGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 28150 | 0.68 | 0.472586 |
Target: 5'- aGCUGcCCGGCCUcGAcg-CGCUGCCCu -3' miRNA: 3'- cCGGU-GGCUGGA-CUagaGCGACGGGc -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 63793 | 0.68 | 0.463024 |
Target: 5'- uGGCCGCguuCUUGAUCUUGCgugugGUCCGc -3' miRNA: 3'- -CCGGUGgcuGGACUAGAGCGa----CGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 49679 | 0.68 | 0.463024 |
Target: 5'- cGGCCugguagUCGGCCUcGcgCUCGCUGUCgGu -3' miRNA: 3'- -CCGGu-----GGCUGGA-CuaGAGCGACGGgC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 4503 | 0.68 | 0.444212 |
Target: 5'- cGCCACCGcGCCggGAguggCGCUGCgCGg -3' miRNA: 3'- cCGGUGGC-UGGa-CUaga-GCGACGgGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 36135 | 0.68 | 0.444212 |
Target: 5'- gGGCCGCCGGgCUG-UCcgUCGCcaugGCCaCGg -3' miRNA: 3'- -CCGGUGGCUgGACuAG--AGCGa---CGG-GC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 18144 | 0.68 | 0.444212 |
Target: 5'- aGGCCAUgGACgaGAUCggGCUGaCgCCGg -3' miRNA: 3'- -CCGGUGgCUGgaCUAGagCGAC-G-GGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 56384 | 0.68 | 0.434967 |
Target: 5'- gGGCCGCguCGGCUgaucGUCUCGauggUGCCCGg -3' miRNA: 3'- -CCGGUG--GCUGGac--UAGAGCg---ACGGGC- -5' |
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23377 | 5' | -59.5 | NC_005259.1 | + | 43966 | 0.68 | 0.434967 |
Target: 5'- gGGCCGCCG-CCUGAcCgagggCGgUGCCg- -3' miRNA: 3'- -CCGGUGGCuGGACUaGa----GCgACGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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