miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23377 5' -59.5 NC_005259.1 + 49101 0.7 0.341181
Target:  5'- uGGCCGCCcGCCggGAUCUcaagaCGCUGaucaCCGg -3'
miRNA:   3'- -CCGGUGGcUGGa-CUAGA-----GCGACg---GGC- -5'
23377 5' -59.5 NC_005259.1 + 46948 0.7 0.333414
Target:  5'- cGCCGCCGACCgcguUGAgCUUGUUGgCCa -3'
miRNA:   3'- cCGGUGGCUGG----ACUaGAGCGACgGGc -5'
23377 5' -59.5 NC_005259.1 + 46818 0.66 0.562524
Target:  5'- -aCCACCGgccACCUGAgugagCgccccggcgaGCUGCCCGa -3'
miRNA:   3'- ccGGUGGC---UGGACUa----Gag--------CGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 46552 0.72 0.272664
Target:  5'- uGGUCGCCGACCgcgccuaUGGUCgcggcgucgaccgCGCcGCCCGa -3'
miRNA:   3'- -CCGGUGGCUGG-------ACUAGa------------GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 46298 0.66 0.542029
Target:  5'- gGGCCGCCGuGgCUGcguugUUCGCgGCCCc -3'
miRNA:   3'- -CCGGUGGC-UgGACua---GAGCGaCGGGc -5'
23377 5' -59.5 NC_005259.1 + 45603 0.67 0.511777
Target:  5'- --gCACCGACagcucGGUCUCGaUGCCCGc -3'
miRNA:   3'- ccgGUGGCUGga---CUAGAGCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 43966 0.68 0.434967
Target:  5'- gGGCCGCCG-CCUGAcCgagggCGgUGCCg- -3'
miRNA:   3'- -CCGGUGGCuGGACUaGa----GCgACGGgc -5'
23377 5' -59.5 NC_005259.1 + 42955 0.71 0.280671
Target:  5'- aGGCCGCCGuugucgaacgggauGCCgggGAUCaUCGUUGCCg- -3'
miRNA:   3'- -CCGGUGGC--------------UGGa--CUAG-AGCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 42663 0.66 0.572851
Target:  5'- cGGCCACgCGGCUgcuguuggcGAUCUCGac-CCCGu -3'
miRNA:   3'- -CCGGUG-GCUGGa--------CUAGAGCgacGGGC- -5'
23377 5' -59.5 NC_005259.1 + 40689 0.7 0.349077
Target:  5'- uGCuCACCGGCCcgaUGAUCggGgUGCCCGc -3'
miRNA:   3'- cCG-GUGGCUGG---ACUAGagCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 38799 0.69 0.416819
Target:  5'- cGCUGCCGAUgaGAUCgccCGC-GCCCGc -3'
miRNA:   3'- cCGGUGGCUGgaCUAGa--GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 38682 0.66 0.589463
Target:  5'- uGGCCGCCGggucgagguuggccACCUGAgaCUguagguugaccacCGCUGCCg- -3'
miRNA:   3'- -CCGGUGGC--------------UGGACUa-GA-------------GCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 37275 0.66 0.552248
Target:  5'- aGGCCGCCcggcagGACUUGcAUggCGgUGCCCGc -3'
miRNA:   3'- -CCGGUGG------CUGGAC-UAgaGCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 37216 0.67 0.482247
Target:  5'- cGCCGCCGccGCCgGGg--CGCUgGCCCGu -3'
miRNA:   3'- cCGGUGGC--UGGaCUagaGCGA-CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 36782 0.68 0.434967
Target:  5'- uGCCGCCGuCCUGAccgCUCGCgucgGCauuguugaCCGg -3'
miRNA:   3'- cCGGUGGCuGGACUa--GAGCGa---CG--------GGC- -5'
23377 5' -59.5 NC_005259.1 + 36671 0.66 0.59363
Target:  5'- cGCCGCCGccGCCggGGUCUUGaccguccucGCCCGc -3'
miRNA:   3'- cCGGUGGC--UGGa-CUAGAGCga-------CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 36135 0.68 0.444212
Target:  5'- gGGCCGCCGGgCUG-UCcgUCGCcaugGCCaCGg -3'
miRNA:   3'- -CCGGUGGCUgGACuAG--AGCGa---CGG-GC- -5'
23377 5' -59.5 NC_005259.1 + 35709 0.7 0.352272
Target:  5'- gGGUCGCUGACgaGGUauccgcccgacgaccCggCGCUGCCCGg -3'
miRNA:   3'- -CCGGUGGCUGgaCUA---------------Ga-GCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 35566 0.67 0.492002
Target:  5'- uGCCGCCGACCgccgaGAUCcCGUUGUagCUGa -3'
miRNA:   3'- cCGGUGGCUGGa----CUAGaGCGACG--GGC- -5'
23377 5' -59.5 NC_005259.1 + 33623 0.66 0.59363
Target:  5'- cGGCCACCGAaaCUGuugcgaaUCGC-GCUCGg -3'
miRNA:   3'- -CCGGUGGCUg-GACuag----AGCGaCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.