miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23378 3' -57.8 NC_005259.1 + 28343 0.68 0.503279
Target:  5'- cGGCgaaaUCGAGGCCACgGugC-UGGCugCc -3'
miRNA:   3'- -UCG----AGCUCCGGUGaCugGgACUGugG- -5'
23378 3' -57.8 NC_005259.1 + 20456 0.68 0.507318
Target:  5'- gAGC-CGGGGUgGCUcggaugaccgccgucGACCUcGACACCg -3'
miRNA:   3'- -UCGaGCUCCGgUGA---------------CUGGGaCUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 37268 0.68 0.52361
Target:  5'- aGGCUUGAGGCCGCccggcagGACUUgcaUGGCgguGCCc -3'
miRNA:   3'- -UCGAGCUCCGGUGa------CUGGG---ACUG---UGG- -5'
23378 3' -57.8 NC_005259.1 + 13146 0.68 0.52361
Target:  5'- cGGCUCGAucauGGCCACcauCCCgcccGAgACCg -3'
miRNA:   3'- -UCGAGCU----CCGGUGacuGGGa---CUgUGG- -5'
23378 3' -57.8 NC_005259.1 + 13683 0.68 0.52361
Target:  5'- uGCUCGuggacccguGGCCGgUcGACCCcgccucGACACCg -3'
miRNA:   3'- uCGAGCu--------CCGGUgA-CUGGGa-----CUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 2933 0.68 0.52361
Target:  5'- uAGCgaaagCGuccaAGGCgCGCgaGACCCUGGcCACCg -3'
miRNA:   3'- -UCGa----GC----UCCG-GUGa-CUGGGACU-GUGG- -5'
23378 3' -57.8 NC_005259.1 + 1539 0.67 0.544248
Target:  5'- cGGCaucaUCGGGGCCGCguucggGGCggUGACGCUg -3'
miRNA:   3'- -UCG----AGCUCCGGUGa-----CUGggACUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 3830 0.67 0.565143
Target:  5'- ---aCGGGGCCACgacgaUGuCCCUcGCACCg -3'
miRNA:   3'- ucgaGCUCCGGUG-----ACuGGGAcUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 57969 0.67 0.565143
Target:  5'- uGgUCGAGGUCGCcggGAUCgUGACcCCg -3'
miRNA:   3'- uCgAGCUCCGGUGa--CUGGgACUGuGG- -5'
23378 3' -57.8 NC_005259.1 + 17406 0.67 0.565143
Target:  5'- cAGCUacagagguucuaCGAGGCCGCacuGCCCgagGACAUUg -3'
miRNA:   3'- -UCGA------------GCUCCGGUGac-UGGGa--CUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 45013 0.67 0.565143
Target:  5'- cGC-CGGGGCCGCgccGCCCUGcuucaugaGCugCu -3'
miRNA:   3'- uCGaGCUCCGGUGac-UGGGAC--------UGugG- -5'
23378 3' -57.8 NC_005259.1 + 63230 0.67 0.575671
Target:  5'- cAGaUCGGGGUCGCUggucaGACCC-GACGCg -3'
miRNA:   3'- -UCgAGCUCCGGUGA-----CUGGGaCUGUGg -5'
23378 3' -57.8 NC_005259.1 + 60354 0.67 0.586242
Target:  5'- cAGgUCGAGGCC-CUG-CCCgaaauccCGCCa -3'
miRNA:   3'- -UCgAGCUCCGGuGACuGGGacu----GUGG- -5'
23378 3' -57.8 NC_005259.1 + 33954 0.67 0.595788
Target:  5'- cAGCUUGAGGCuCAUcccacgaccaccuUG-CCCUGA-GCCg -3'
miRNA:   3'- -UCGAGCUCCG-GUG-------------ACuGGGACUgUGG- -5'
23378 3' -57.8 NC_005259.1 + 21928 0.66 0.607485
Target:  5'- aGGCagUCGAGGCCAUcGAgucUCaCUGGCGCa -3'
miRNA:   3'- -UCG--AGCUCCGGUGaCU---GG-GACUGUGg -5'
23378 3' -57.8 NC_005259.1 + 57462 0.66 0.607485
Target:  5'- cGCUgCGgcAGGCCGgUGGCaCCgGACACg -3'
miRNA:   3'- uCGA-GC--UCCGGUgACUG-GGaCUGUGg -5'
23378 3' -57.8 NC_005259.1 + 55503 0.66 0.618141
Target:  5'- cAGCgucaCGAGGCCcacagcgaACUGugCCcacaGCGCCg -3'
miRNA:   3'- -UCGa---GCUCCGG--------UGACugGGac--UGUGG- -5'
23378 3' -57.8 NC_005259.1 + 47641 0.66 0.618141
Target:  5'- gGGCagCGAGGCCcucuuugaacguGCUGuugaugGCCUUGGcCACCu -3'
miRNA:   3'- -UCGa-GCUCCGG------------UGAC------UGGGACU-GUGG- -5'
23378 3' -57.8 NC_005259.1 + 2128 0.66 0.618141
Target:  5'- cGC-CGAGGUCACgcaGACCC--GCACg -3'
miRNA:   3'- uCGaGCUCCGGUGa--CUGGGacUGUGg -5'
23378 3' -57.8 NC_005259.1 + 21567 0.66 0.618141
Target:  5'- uGCgaacacugCGAGGUCgAUUGGCCaugcGACACCg -3'
miRNA:   3'- uCGa-------GCUCCGG-UGACUGGga--CUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.