Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23378 | 3' | -57.8 | NC_005259.1 | + | 45013 | 0.67 | 0.565143 |
Target: 5'- cGC-CGGGGCCGCgccGCCCUGcuucaugaGCugCu -3' miRNA: 3'- uCGaGCUCCGGUGac-UGGGAC--------UGugG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 17406 | 0.67 | 0.565143 |
Target: 5'- cAGCUacagagguucuaCGAGGCCGCacuGCCCgagGACAUUg -3' miRNA: 3'- -UCGA------------GCUCCGGUGac-UGGGa--CUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 57969 | 0.67 | 0.565143 |
Target: 5'- uGgUCGAGGUCGCcggGAUCgUGACcCCg -3' miRNA: 3'- uCgAGCUCCGGUGa--CUGGgACUGuGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 3830 | 0.67 | 0.565143 |
Target: 5'- ---aCGGGGCCACgacgaUGuCCCUcGCACCg -3' miRNA: 3'- ucgaGCUCCGGUG-----ACuGGGAcUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 1539 | 0.67 | 0.544248 |
Target: 5'- cGGCaucaUCGGGGCCGCguucggGGCggUGACGCUg -3' miRNA: 3'- -UCG----AGCUCCGGUGa-----CUGggACUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 37268 | 0.68 | 0.52361 |
Target: 5'- aGGCUUGAGGCCGCccggcagGACUUgcaUGGCgguGCCc -3' miRNA: 3'- -UCGAGCUCCGGUGa------CUGGG---ACUG---UGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 13146 | 0.68 | 0.52361 |
Target: 5'- cGGCUCGAucauGGCCACcauCCCgcccGAgACCg -3' miRNA: 3'- -UCGAGCU----CCGGUGacuGGGa---CUgUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 2933 | 0.68 | 0.52361 |
Target: 5'- uAGCgaaagCGuccaAGGCgCGCgaGACCCUGGcCACCg -3' miRNA: 3'- -UCGa----GC----UCCG-GUGa-CUGGGACU-GUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 13683 | 0.68 | 0.52361 |
Target: 5'- uGCUCGuggacccguGGCCGgUcGACCCcgccucGACACCg -3' miRNA: 3'- uCGAGCu--------CCGGUgA-CUGGGa-----CUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 20456 | 0.68 | 0.507318 |
Target: 5'- gAGC-CGGGGUgGCUcggaugaccgccgucGACCUcGACACCg -3' miRNA: 3'- -UCGaGCUCCGgUGA---------------CUGGGaCUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 28343 | 0.68 | 0.503279 |
Target: 5'- cGGCgaaaUCGAGGCCACgGugC-UGGCugCc -3' miRNA: 3'- -UCG----AGCUCCGGUGaCugGgACUGugG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 68399 | 0.68 | 0.503279 |
Target: 5'- uGCUCu-GGaCCACcaacguaGACCUUGACGCCu -3' miRNA: 3'- uCGAGcuCC-GGUGa------CUGGGACUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 64027 | 0.68 | 0.503279 |
Target: 5'- aGGCgcggCGAGGCCGgUGACCg-GAUcuuucucuuGCCg -3' miRNA: 3'- -UCGa---GCUCCGGUgACUGGgaCUG---------UGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 55905 | 0.68 | 0.493242 |
Target: 5'- cGC-CGGGGUCGCUGGCCa-GACcGCUg -3' miRNA: 3'- uCGaGCUCCGGUGACUGGgaCUG-UGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 22438 | 0.68 | 0.493242 |
Target: 5'- -uCUCuGGGCCAUcGACUCUGGCuACCu -3' miRNA: 3'- ucGAGcUCCGGUGaCUGGGACUG-UGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 49365 | 0.68 | 0.493242 |
Target: 5'- cGCgaugaaGAGGCCGgUGAgaucguUCUUGACGCCg -3' miRNA: 3'- uCGag----CUCCGGUgACU------GGGACUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 56262 | 0.69 | 0.473452 |
Target: 5'- cGGcCUUGAGcGCCGCcgcccGGCCCguaucGGCACCa -3' miRNA: 3'- -UC-GAGCUC-CGGUGa----CUGGGa----CUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 45481 | 0.69 | 0.463708 |
Target: 5'- gAGCUUcuGGCCGCUGgugGCCUUGGuCGCUg -3' miRNA: 3'- -UCGAGcuCCGGUGAC---UGGGACU-GUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 25496 | 0.69 | 0.457912 |
Target: 5'- cGCUCGcgcgugagggcaaaaAGGCC-CUcGACCgUGGCAUCg -3' miRNA: 3'- uCGAGC---------------UCCGGuGA-CUGGgACUGUGG- -5' |
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23378 | 3' | -57.8 | NC_005259.1 | + | 45315 | 0.69 | 0.454069 |
Target: 5'- cGC-CGAGGCCGCcgccgaacugcgUGGCCU--GCGCCg -3' miRNA: 3'- uCGaGCUCCGGUG------------ACUGGGacUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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