miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23379 5' -61.9 NC_005259.1 + 43063 0.66 0.439856
Target:  5'- aCGGGGUCgGUgaggaaCGCGaGCCcguuGCCGCCGa -3'
miRNA:   3'- -GCCCCAGaCA------GCGCgUGG----CGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 40817 0.66 0.439856
Target:  5'- uCGGGGUCga-CGCGCACgauggGCCGCg-- -3'
miRNA:   3'- -GCCCCAGacaGCGCGUGg----CGGUGgua -5'
23379 5' -61.9 NC_005259.1 + 37627 0.66 0.439856
Target:  5'- uGGGGaugaugugCUGccCGaugacCGCACCGCCGCCGc -3'
miRNA:   3'- gCCCCa-------GACa-GC-----GCGUGGCGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 8550 0.66 0.430714
Target:  5'- uCGGcGGUgUagcccaugcGcCGCaGCACCGCCACCGc -3'
miRNA:   3'- -GCC-CCAgA---------CaGCG-CGUGGCGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 5908 0.66 0.421685
Target:  5'- uCGaGGUCgagGUgcUGCGCACCGUCgACCGUa -3'
miRNA:   3'- -GCcCCAGa--CA--GCGCGUGGCGG-UGGUA- -5'
23379 5' -61.9 NC_005259.1 + 18623 0.66 0.41277
Target:  5'- aGcGGUgUGcCGCGCAUCGCC-CCGUu -3'
miRNA:   3'- gCcCCAgACaGCGCGUGGCGGuGGUA- -5'
23379 5' -61.9 NC_005259.1 + 35501 0.66 0.403973
Target:  5'- -uGGGUUggccccGUUGC-CGCCGCCGCCGg -3'
miRNA:   3'- gcCCCAGa-----CAGCGcGUGGCGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 36422 0.68 0.308114
Target:  5'- -aGGGUCaugGUCuGCGCAgCGUCGCCGa -3'
miRNA:   3'- gcCCCAGa--CAG-CGCGUgGCGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 33054 0.69 0.29185
Target:  5'- cCGGGGUCgcUCGCGUGCUucugguauccgcugGCCACCu- -3'
miRNA:   3'- -GCCCCAGacAGCGCGUGG--------------CGGUGGua -5'
23379 5' -61.9 NC_005259.1 + 37227 0.69 0.286352
Target:  5'- cCGGGGcgCUGgccCGUGCcggauugGCUGCCGCCGUu -3'
miRNA:   3'- -GCCCCa-GACa--GCGCG-------UGGCGGUGGUA- -5'
23379 5' -61.9 NC_005259.1 + 5431 0.69 0.280265
Target:  5'- uCGaGGUCUG-CGCcCGCUGCCGCCGa -3'
miRNA:   3'- -GCcCCAGACaGCGcGUGGCGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 66021 0.7 0.252599
Target:  5'- uCGGGGcCgcacgUGUUGCGCGCgagcucgacguagaCGCCGCCGUg -3'
miRNA:   3'- -GCCCCaG-----ACAGCGCGUG--------------GCGGUGGUA- -5'
23379 5' -61.9 NC_005259.1 + 28012 0.71 0.203519
Target:  5'- gCGGGGUCgccgggGUUGCGCGCguugGCCAgCCAc -3'
miRNA:   3'- -GCCCCAGa-----CAGCGCGUGg---CGGU-GGUa -5'
23379 5' -61.9 NC_005259.1 + 6250 0.71 0.203519
Target:  5'- aGuGGGUCgauaUCcCGCACCGCCGCCGc -3'
miRNA:   3'- gC-CCCAGac--AGcGCGUGGCGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 6211 0.72 0.188614
Target:  5'- gCGGGGUgaGcCGcCGCGCCGaCACCGUg -3'
miRNA:   3'- -GCCCCAgaCaGC-GCGUGGCgGUGGUA- -5'
23379 5' -61.9 NC_005259.1 + 27479 0.72 0.17024
Target:  5'- cCGGGGUCggUGUgGC-CACCGCC-CCAc -3'
miRNA:   3'- -GCCCCAG--ACAgCGcGUGGCGGuGGUa -5'
23379 5' -61.9 NC_005259.1 + 58727 0.72 0.17024
Target:  5'- cCGGGGg-UGUCGUugGCACCGgCACCGg -3'
miRNA:   3'- -GCCCCagACAGCG--CGUGGCgGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 45395 0.75 0.111841
Target:  5'- uCGGGGUCgccgccgagCGCGCugaugGCCGCCGCCGc -3'
miRNA:   3'- -GCCCCAGaca------GCGCG-----UGGCGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 12308 0.76 0.09022
Target:  5'- gCGGGcaaUGUCgguGCGCACCGCCGCCAg -3'
miRNA:   3'- -GCCCcagACAG---CGCGUGGCGGUGGUa -5'
23379 5' -61.9 NC_005259.1 + 58692 0.77 0.074613
Target:  5'- gCGGGGUCggcucGUCGcCGcCGCCGUCACCAUc -3'
miRNA:   3'- -GCCCCAGa----CAGC-GC-GUGGCGGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.