miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23380 3' -59.4 NC_005259.1 + 937 0.73 0.230628
Target:  5'- gCGCGAcagcggaaaaGUCGGGC-AGCUCGcGCAACg -3'
miRNA:   3'- gGCGCU----------CAGCCCGuUCGGGC-CGUUGg -5'
23380 3' -59.4 NC_005259.1 + 2007 0.68 0.487142
Target:  5'- aCGCGGccaUCGGGUGGcGCaCCGGC-ACCu -3'
miRNA:   3'- gGCGCUc--AGCCCGUU-CG-GGCCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 3151 0.66 0.608639
Target:  5'- cCCGUGGGaCuacacGGUGAuGCCCGGCGAUg -3'
miRNA:   3'- -GGCGCUCaGc----CCGUU-CGGGCCGUUGg -5'
23380 3' -59.4 NC_005259.1 + 3325 0.68 0.487142
Target:  5'- aCGUGAGcgcCGGGCAGcucugcguGCUCGGCAcgACUc -3'
miRNA:   3'- gGCGCUCa--GCCCGUU--------CGGGCCGU--UGG- -5'
23380 3' -59.4 NC_005259.1 + 4261 0.72 0.271656
Target:  5'- aCUGCGAGgacaaCGGGCGgcugcgcugccacgAGCacggaCCGGCGGCCc -3'
miRNA:   3'- -GGCGCUCa----GCCCGU--------------UCG-----GGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 4451 0.67 0.515643
Target:  5'- gUGCGAGU-GGGCAgcguaugggccaaGGCCauCGGCGguggACCa -3'
miRNA:   3'- gGCGCUCAgCCCGU-------------UCGG--GCCGU----UGG- -5'
23380 3' -59.4 NC_005259.1 + 5068 0.68 0.487142
Target:  5'- aUCGUGGGcCGGGUcgacGGGCcggugucaCCGGCGAUCu -3'
miRNA:   3'- -GGCGCUCaGCCCG----UUCG--------GGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 8313 0.67 0.516638
Target:  5'- gCCGCcuuGUCGGaGCu-GCCgaCGGCGAUCa -3'
miRNA:   3'- -GGCGcu-CAGCC-CGuuCGG--GCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 8388 0.7 0.378306
Target:  5'- uCgGCGAGagccUCGG-CGAGCCgGGCcACCu -3'
miRNA:   3'- -GgCGCUC----AGCCcGUUCGGgCCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 8657 0.69 0.430715
Target:  5'- gCUGUG-GUCGGGCu-GCCacgcgGGCAACg -3'
miRNA:   3'- -GGCGCuCAGCCCGuuCGGg----CCGUUGg -5'
23380 3' -59.4 NC_005259.1 + 9098 0.67 0.524627
Target:  5'- cCCGcCGAGggCGGGgAAcucaaucccacgcGCCCcgguacgGGCAGCCg -3'
miRNA:   3'- -GGC-GCUCa-GCCCgUU-------------CGGG-------CCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 9150 0.67 0.557016
Target:  5'- cUCGUGcccGUCGacGGCAuGCCggUGGCAGCCg -3'
miRNA:   3'- -GGCGCu--CAGC--CCGUuCGG--GCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 9533 0.67 0.536696
Target:  5'- gCCGcCGGGUCaccGGagagcuGCCCGGCcucGACCg -3'
miRNA:   3'- -GGC-GCUCAGc--CCguu---CGGGCCG---UUGG- -5'
23380 3' -59.4 NC_005259.1 + 10493 0.66 0.56726
Target:  5'- gUCGUGGuuGUUGGGguuGUCCGGCAcggGCCa -3'
miRNA:   3'- -GGCGCU--CAGCCCguuCGGGCCGU---UGG- -5'
23380 3' -59.4 NC_005259.1 + 11949 0.68 0.467926
Target:  5'- uUCGCGcAGcCcGGCGAGCacgucgaacCCGGCGACUg -3'
miRNA:   3'- -GGCGC-UCaGcCCGUUCG---------GGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 12005 0.66 0.595136
Target:  5'- aUCGauaGAGUCGGu--GGCCuuguacggugcgggCGGCAACCg -3'
miRNA:   3'- -GGCg--CUCAGCCcguUCGG--------------GCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 12530 0.69 0.395296
Target:  5'- cCCGUaGAGcCGaGCGAGCCCcacGGCAuuGCCg -3'
miRNA:   3'- -GGCG-CUCaGCcCGUUCGGG---CCGU--UGG- -5'
23380 3' -59.4 NC_005259.1 + 13829 0.68 0.496889
Target:  5'- gCGUGAugaccGaCGGGCAcauuGCCCGGCGAa- -3'
miRNA:   3'- gGCGCU-----CaGCCCGUu---CGGGCCGUUgg -5'
23380 3' -59.4 NC_005259.1 + 14228 0.68 0.458466
Target:  5'- gCGCGcGUCGuGCGuaucgGGCCgGGCAACg -3'
miRNA:   3'- gGCGCuCAGCcCGU-----UCGGgCCGUUGg -5'
23380 3' -59.4 NC_005259.1 + 14863 0.67 0.557016
Target:  5'- cUCGCGAGguUCGcGCu-GCCCGaGCcGCCg -3'
miRNA:   3'- -GGCGCUC--AGCcCGuuCGGGC-CGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.