miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23380 3' -59.4 NC_005259.1 + 15589 0.71 0.300959
Target:  5'- gCGCGA--CGGGCcgcauGAGCUaCGGCAGCCc -3'
miRNA:   3'- gGCGCUcaGCCCG-----UUCGG-GCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 16524 0.73 0.224973
Target:  5'- gCUGCGAGcgucgcucaaGGGUgcGCCCGaGCGACCa -3'
miRNA:   3'- -GGCGCUCag--------CCCGuuCGGGC-CGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 17472 0.71 0.3132
Target:  5'- aCCGUG-GUgacgcccggccaugCGGGCAAGgaCGGCGACCu -3'
miRNA:   3'- -GGCGCuCA--------------GCCCGUUCggGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 17766 0.67 0.526631
Target:  5'- gCCGCGcGcCGGGcCGAGCgcaCCGaGCGugCg -3'
miRNA:   3'- -GGCGCuCaGCCC-GUUCG---GGC-CGUugG- -5'
23380 3' -59.4 NC_005259.1 + 17826 0.68 0.467926
Target:  5'- -aGCGAGgccaucgaCGGGUggGCCgaGGCcACCc -3'
miRNA:   3'- ggCGCUCa-------GCCCGuuCGGg-CCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 18779 0.66 0.608639
Target:  5'- aUCGCGG--UGGGCAAGCggUGGCAgggacGCCg -3'
miRNA:   3'- -GGCGCUcaGCCCGUUCGg-GCCGU-----UGG- -5'
23380 3' -59.4 NC_005259.1 + 20451 0.73 0.224973
Target:  5'- aCGaCGAGcCGGGguGGCUCGGaUGACCg -3'
miRNA:   3'- gGC-GCUCaGCCCguUCGGGCC-GUUGG- -5'
23380 3' -59.4 NC_005259.1 + 20994 0.66 0.587883
Target:  5'- gUGUGGGccuacUCGGGC-GGCgacccugaCCGGCAGCUg -3'
miRNA:   3'- gGCGCUC-----AGCCCGuUCG--------GGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 22365 0.75 0.170241
Target:  5'- gUCGCGAcgacaaGGGCAaaAGCCCGGuCGGCCu -3'
miRNA:   3'- -GGCGCUcag---CCCGU--UCGGGCC-GUUGG- -5'
23380 3' -59.4 NC_005259.1 + 23289 0.72 0.293933
Target:  5'- gCGCGguGGUUGGGUAucggGGUCCGGCGcggucggugucGCCg -3'
miRNA:   3'- gGCGC--UCAGCCCGU----UCGGGCCGU-----------UGG- -5'
23380 3' -59.4 NC_005259.1 + 24247 0.67 0.506723
Target:  5'- aCGCGAGUUcGGCGAGUgCGuGCAcGCg -3'
miRNA:   3'- gGCGCUCAGcCCGUUCGgGC-CGU-UGg -5'
23380 3' -59.4 NC_005259.1 + 25927 0.66 0.56726
Target:  5'- gCCGCcGGUCcGGUGAgcgcacgccgguGCCCGGCccGCCg -3'
miRNA:   3'- -GGCGcUCAGcCCGUU------------CGGGCCGu-UGG- -5'
23380 3' -59.4 NC_005259.1 + 26438 0.73 0.236402
Target:  5'- aCCGcCGAG-CGGGCGGGCC-GGUgGGCCg -3'
miRNA:   3'- -GGC-GCUCaGCCCGUUCGGgCCG-UUGG- -5'
23380 3' -59.4 NC_005259.1 + 27355 0.71 0.322813
Target:  5'- gCCGUacuGA-UCGGGCuugguGCCCGGCAcggugACCg -3'
miRNA:   3'- -GGCG---CUcAGCCCGuu---CGGGCCGU-----UGG- -5'
23380 3' -59.4 NC_005259.1 + 27919 0.69 0.403974
Target:  5'- gCGCGGGU--GGUAgcGGUUCGGCGACCc -3'
miRNA:   3'- gGCGCUCAgcCCGU--UCGGGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 29057 0.7 0.345828
Target:  5'- gCCGCGAG-CGcGGUAucGGCCCGaucuGCGcuGCCa -3'
miRNA:   3'- -GGCGCUCaGC-CCGU--UCGGGC----CGU--UGG- -5'
23380 3' -59.4 NC_005259.1 + 29955 0.68 0.477486
Target:  5'- gUCGCGgcuGGUgGGGCGGGC--GGUGACCg -3'
miRNA:   3'- -GGCGC---UCAgCCCGUUCGggCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 30135 0.66 0.608639
Target:  5'- gCUGCGAuaccUCGGGCAGcucGaCCgGGCcGCCu -3'
miRNA:   3'- -GGCGCUc---AGCCCGUU---C-GGgCCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 30801 0.78 0.111841
Target:  5'- aCCGCcggaacaccuGAGUCGGGU-AGUCCGGCGcGCCg -3'
miRNA:   3'- -GGCG----------CUCAGCCCGuUCGGGCCGU-UGG- -5'
23380 3' -59.4 NC_005259.1 + 32512 0.67 0.546826
Target:  5'- aCCGUGAgguaGUCGaGGCGGGCggcaGGCuuGACCu -3'
miRNA:   3'- -GGCGCU----CAGC-CCGUUCGgg--CCG--UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.