miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23380 3' -59.4 NC_005259.1 + 65475 0.7 0.345828
Target:  5'- uCCGCGuGUCuGGCu-GCCauaGGCuGCCa -3'
miRNA:   3'- -GGCGCuCAGcCCGuuCGGg--CCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 60589 0.7 0.345828
Target:  5'- aCgGCGAGUCGGGUgccgucaucGAGCagcacaGGCGGCg -3'
miRNA:   3'- -GgCGCUCAGCCCG---------UUCGgg----CCGUUGg -5'
23380 3' -59.4 NC_005259.1 + 66123 0.7 0.353758
Target:  5'- aCGCGcGUCGaGCAGGCCaucagaCGGCGugCg -3'
miRNA:   3'- gGCGCuCAGCcCGUUCGG------GCCGUugG- -5'
23380 3' -59.4 NC_005259.1 + 42545 0.7 0.353758
Target:  5'- aC-CGAGguggCGGGC-AGCUCGGCGAgCa -3'
miRNA:   3'- gGcGCUCa---GCCCGuUCGGGCCGUUgG- -5'
23380 3' -59.4 NC_005259.1 + 58963 0.7 0.361814
Target:  5'- gCCaGCaGGUCGGGC-AGCUcguCGGCGACg -3'
miRNA:   3'- -GG-CGcUCAGCCCGuUCGG---GCCGUUGg -5'
23380 3' -59.4 NC_005259.1 + 43059 0.7 0.369997
Target:  5'- aCCGacgGGGUCGGugaggaacGCGAGCCCGuuGCcGCCg -3'
miRNA:   3'- -GGCg--CUCAGCC--------CGUUCGGGC--CGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 8388 0.7 0.378306
Target:  5'- uCgGCGAGagccUCGG-CGAGCCgGGCcACCu -3'
miRNA:   3'- -GgCGCUC----AGCCcGUUCGGgCCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 46659 0.7 0.378306
Target:  5'- gCUGCG-GUUGagguucucGGCGAGCUCGGCcugAGCCg -3'
miRNA:   3'- -GGCGCuCAGC--------CCGUUCGGGCCG---UUGG- -5'
23380 3' -59.4 NC_005259.1 + 55716 0.7 0.38674
Target:  5'- gCCGCGAGcaccUCGcccuuguuGGCAAGCuuGGUggugucgaGACCg -3'
miRNA:   3'- -GGCGCUC----AGC--------CCGUUCGggCCG--------UUGG- -5'
23380 3' -59.4 NC_005259.1 + 60548 0.7 0.38674
Target:  5'- gCCGCucGUC-GGCAuGCCCGGU-GCCg -3'
miRNA:   3'- -GGCGcuCAGcCCGUuCGGGCCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 12530 0.69 0.395296
Target:  5'- cCCGUaGAGcCGaGCGAGCCCcacGGCAuuGCCg -3'
miRNA:   3'- -GGCG-CUCaGCcCGUUCGGG---CCGU--UGG- -5'
23380 3' -59.4 NC_005259.1 + 27919 0.69 0.403974
Target:  5'- gCGCGGGU--GGUAgcGGUUCGGCGACCc -3'
miRNA:   3'- gGCGCUCAgcCCGU--UCGGGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 59469 0.69 0.403974
Target:  5'- aCCGacuuGUUGGGCAggauGGCCCGaUAGCCg -3'
miRNA:   3'- -GGCgcu-CAGCCCGU----UCGGGCcGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 53185 0.69 0.412771
Target:  5'- gCCGCccGUCGcGGUGucCCCGGCGAUCa -3'
miRNA:   3'- -GGCGcuCAGC-CCGUucGGGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 8657 0.69 0.430715
Target:  5'- gCUGUG-GUCGGGCu-GCCacgcgGGCAACg -3'
miRNA:   3'- -GGCGCuCAGCCCGuuCGGg----CCGUUGg -5'
23380 3' -59.4 NC_005259.1 + 58546 0.69 0.434358
Target:  5'- cCCGuCGAGguuacggcUCGGGCGguugggccggaucgcGGCgCGGCuGCCg -3'
miRNA:   3'- -GGC-GCUC--------AGCCCGU---------------UCGgGCCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 14228 0.68 0.458466
Target:  5'- gCGCGcGUCGuGCGuaucgGGCCgGGCAACg -3'
miRNA:   3'- gGCGCuCAGCcCGU-----UCGGgCCGUUGg -5'
23380 3' -59.4 NC_005259.1 + 40148 0.68 0.458466
Target:  5'- gCCGuCGGuuGUCGGuGCccGcCCCGGCAGCUc -3'
miRNA:   3'- -GGC-GCU--CAGCC-CGuuC-GGGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 17826 0.68 0.467926
Target:  5'- -aGCGAGgccaucgaCGGGUggGCCgaGGCcACCc -3'
miRNA:   3'- ggCGCUCa-------GCCCGuuCGGg-CCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 11949 0.68 0.467926
Target:  5'- uUCGCGcAGcCcGGCGAGCacgucgaacCCGGCGACUg -3'
miRNA:   3'- -GGCGC-UCaGcCCGUUCG---------GGCCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.