miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23380 3' -59.4 NC_005259.1 + 9533 0.67 0.536696
Target:  5'- gCCGcCGGGUCaccGGagagcuGCCCGGCcucGACCg -3'
miRNA:   3'- -GGC-GCUCAGc--CCguu---CGGGCCG---UUGG- -5'
23380 3' -59.4 NC_005259.1 + 68119 0.67 0.526631
Target:  5'- --uCGGGUCGagagcagcGGCGAGCUCGGCAGg- -3'
miRNA:   3'- ggcGCUCAGC--------CCGUUCGGGCCGUUgg -5'
23380 3' -59.4 NC_005259.1 + 17766 0.67 0.526631
Target:  5'- gCCGCGcGcCGGGcCGAGCgcaCCGaGCGugCg -3'
miRNA:   3'- -GGCGCuCaGCCC-GUUCG---GGC-CGUugG- -5'
23380 3' -59.4 NC_005259.1 + 59401 0.67 0.525629
Target:  5'- gCGCGAGcgugaccUCGcGCAuGGCgUCGGCGGCCa -3'
miRNA:   3'- gGCGCUC-------AGCcCGU-UCG-GGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 9098 0.67 0.524627
Target:  5'- cCCGcCGAGggCGGGgAAcucaaucccacgcGCCCcgguacgGGCAGCCg -3'
miRNA:   3'- -GGC-GCUCa-GCCCgUU-------------CGGG-------CCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 33584 0.67 0.520627
Target:  5'- aCCGCGucgCGGGCcaccgaggcgcggucGAGCugcaaCCGGCcACCg -3'
miRNA:   3'- -GGCGCucaGCCCG---------------UUCG-----GGCCGuUGG- -5'
23380 3' -59.4 NC_005259.1 + 8313 0.67 0.516638
Target:  5'- gCCGCcuuGUCGGaGCu-GCCgaCGGCGAUCa -3'
miRNA:   3'- -GGCGcu-CAGCC-CGuuCGG--GCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 4451 0.67 0.515643
Target:  5'- gUGCGAGU-GGGCAgcguaugggccaaGGCCauCGGCGguggACCa -3'
miRNA:   3'- gGCGCUCAgCCCGU-------------UCGG--GCCGU----UGG- -5'
23380 3' -59.4 NC_005259.1 + 45101 0.67 0.515643
Target:  5'- cCCGUGuagccGGUCGGGCcgaGAGUggugccgacgaggUCGGCAAUCu -3'
miRNA:   3'- -GGCGC-----UCAGCCCG---UUCG-------------GGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 54518 0.67 0.506723
Target:  5'- aUGUGGGguggCGGGuCGAGUauCCGGCccAGCCa -3'
miRNA:   3'- gGCGCUCa---GCCC-GUUCG--GGCCG--UUGG- -5'
23380 3' -59.4 NC_005259.1 + 24247 0.67 0.506723
Target:  5'- aCGCGAGUUcGGCGAGUgCGuGCAcGCg -3'
miRNA:   3'- gGCGCUCAGcCCGUUCGgGC-CGU-UGg -5'
23380 3' -59.4 NC_005259.1 + 63710 0.67 0.506723
Target:  5'- cCCaGCGGGgaUCGGG---GCCUGcGCAGCCg -3'
miRNA:   3'- -GG-CGCUC--AGCCCguuCGGGC-CGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 64213 0.67 0.506723
Target:  5'- cUCGCcGGUC-GGC-AGCCCGGUAucggggucgauaGCCg -3'
miRNA:   3'- -GGCGcUCAGcCCGuUCGGGCCGU------------UGG- -5'
23380 3' -59.4 NC_005259.1 + 51541 0.68 0.49983
Target:  5'- aCG-GGGcCGGGCAagugcacgacguuggGGCcaacgauCCGGCAGCCg -3'
miRNA:   3'- gGCgCUCaGCCCGU---------------UCG-------GGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 34177 0.68 0.496889
Target:  5'- gCCG-GAacacacCGGGCAguGGCUCGGCAACg -3'
miRNA:   3'- -GGCgCUca----GCCCGU--UCGGGCCGUUGg -5'
23380 3' -59.4 NC_005259.1 + 49423 0.68 0.496889
Target:  5'- gCCaGCGAGaaaCcGGCGAGCgccgccuuggUCGGCAGCCg -3'
miRNA:   3'- -GG-CGCUCa--GcCCGUUCG----------GGCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 13829 0.68 0.496889
Target:  5'- gCGUGAugaccGaCGGGCAcauuGCCCGGCGAa- -3'
miRNA:   3'- gGCGCU-----CaGCCCGUu---CGGGCCGUUgg -5'
23380 3' -59.4 NC_005259.1 + 49591 0.68 0.494933
Target:  5'- -gGCGGGgucagcaccucgaccUCGGGC-AGCUcaucaucgucaucggCGGCAGCCg -3'
miRNA:   3'- ggCGCUC---------------AGCCCGuUCGG---------------GCCGUUGG- -5'
23380 3' -59.4 NC_005259.1 + 3325 0.68 0.487142
Target:  5'- aCGUGAGcgcCGGGCAGcucugcguGCUCGGCAcgACUc -3'
miRNA:   3'- gGCGCUCa--GCCCGUU--------CGGGCCGU--UGG- -5'
23380 3' -59.4 NC_005259.1 + 2007 0.68 0.487142
Target:  5'- aCGCGGccaUCGGGUGGcGCaCCGGC-ACCu -3'
miRNA:   3'- gGCGCUc--AGCCCGUU-CG-GGCCGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.