Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23380 | 3' | -59.4 | NC_005259.1 | + | 5068 | 0.68 | 0.487142 |
Target: 5'- aUCGUGGGcCGGGUcgacGGGCcggugucaCCGGCGAUCu -3' miRNA: 3'- -GGCGCUCaGCCCG----UUCG--------GGCCGUUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 3325 | 0.68 | 0.487142 |
Target: 5'- aCGUGAGcgcCGGGCAGcucugcguGCUCGGCAcgACUc -3' miRNA: 3'- gGCGCUCa--GCCCGUU--------CGGGCCGU--UGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 2007 | 0.68 | 0.487142 |
Target: 5'- aCGCGGccaUCGGGUGGcGCaCCGGC-ACCu -3' miRNA: 3'- gGCGCUc--AGCCCGUU-CG-GGCCGuUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 29955 | 0.68 | 0.477486 |
Target: 5'- gUCGCGgcuGGUgGGGCGGGC--GGUGACCg -3' miRNA: 3'- -GGCGC---UCAgCCCGUUCGggCCGUUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 51820 | 0.68 | 0.477486 |
Target: 5'- -gGCaGGG-CGGGCAGacccGCCCGGUugaucGGCCa -3' miRNA: 3'- ggCG-CUCaGCCCGUU----CGGGCCG-----UUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 11949 | 0.68 | 0.467926 |
Target: 5'- uUCGCGcAGcCcGGCGAGCacgucgaacCCGGCGACUg -3' miRNA: 3'- -GGCGC-UCaGcCCGUUCG---------GGCCGUUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 17826 | 0.68 | 0.467926 |
Target: 5'- -aGCGAGgccaucgaCGGGUggGCCgaGGCcACCc -3' miRNA: 3'- ggCGCUCa-------GCCCGuuCGGg-CCGuUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 40148 | 0.68 | 0.458466 |
Target: 5'- gCCGuCGGuuGUCGGuGCccGcCCCGGCAGCUc -3' miRNA: 3'- -GGC-GCU--CAGCC-CGuuC-GGGCCGUUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 14228 | 0.68 | 0.458466 |
Target: 5'- gCGCGcGUCGuGCGuaucgGGCCgGGCAACg -3' miRNA: 3'- gGCGCuCAGCcCGU-----UCGGgCCGUUGg -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 58546 | 0.69 | 0.434358 |
Target: 5'- cCCGuCGAGguuacggcUCGGGCGguugggccggaucgcGGCgCGGCuGCCg -3' miRNA: 3'- -GGC-GCUC--------AGCCCGU---------------UCGgGCCGuUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 8657 | 0.69 | 0.430715 |
Target: 5'- gCUGUG-GUCGGGCu-GCCacgcgGGCAACg -3' miRNA: 3'- -GGCGCuCAGCCCGuuCGGg----CCGUUGg -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 53185 | 0.69 | 0.412771 |
Target: 5'- gCCGCccGUCGcGGUGucCCCGGCGAUCa -3' miRNA: 3'- -GGCGcuCAGC-CCGUucGGGCCGUUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 27919 | 0.69 | 0.403974 |
Target: 5'- gCGCGGGU--GGUAgcGGUUCGGCGACCc -3' miRNA: 3'- gGCGCUCAgcCCGU--UCGGGCCGUUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 59469 | 0.69 | 0.403974 |
Target: 5'- aCCGacuuGUUGGGCAggauGGCCCGaUAGCCg -3' miRNA: 3'- -GGCgcu-CAGCCCGU----UCGGGCcGUUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 12530 | 0.69 | 0.395296 |
Target: 5'- cCCGUaGAGcCGaGCGAGCCCcacGGCAuuGCCg -3' miRNA: 3'- -GGCG-CUCaGCcCGUUCGGG---CCGU--UGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 60548 | 0.7 | 0.38674 |
Target: 5'- gCCGCucGUC-GGCAuGCCCGGU-GCCg -3' miRNA: 3'- -GGCGcuCAGcCCGUuCGGGCCGuUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 55716 | 0.7 | 0.38674 |
Target: 5'- gCCGCGAGcaccUCGcccuuguuGGCAAGCuuGGUggugucgaGACCg -3' miRNA: 3'- -GGCGCUC----AGC--------CCGUUCGggCCG--------UUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 46659 | 0.7 | 0.378306 |
Target: 5'- gCUGCG-GUUGagguucucGGCGAGCUCGGCcugAGCCg -3' miRNA: 3'- -GGCGCuCAGC--------CCGUUCGGGCCG---UUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 8388 | 0.7 | 0.378306 |
Target: 5'- uCgGCGAGagccUCGG-CGAGCCgGGCcACCu -3' miRNA: 3'- -GgCGCUC----AGCCcGUUCGGgCCGuUGG- -5' |
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23380 | 3' | -59.4 | NC_005259.1 | + | 43059 | 0.7 | 0.369997 |
Target: 5'- aCCGacgGGGUCGGugaggaacGCGAGCCCGuuGCcGCCg -3' miRNA: 3'- -GGCg--CUCAGCC--------CGUUCGGGC--CGuUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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