miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23380 5' -55.8 NC_005259.1 + 61594 0.74 0.341334
Target:  5'- gCGGUgGGCCGGugG-GGUCGGCGg- -3'
miRNA:   3'- aGCUAaCCGGCCugUgCCAGCUGCac -5'
23380 5' -55.8 NC_005259.1 + 37462 0.66 0.794836
Target:  5'- cCGAUUGGCUGGcCACGccgccGUUGGC-UGa -3'
miRNA:   3'- aGCUAACCGGCCuGUGC-----CAGCUGcAC- -5'
23380 5' -55.8 NC_005259.1 + 11590 0.66 0.785339
Target:  5'- gCGGgcUUGGCCGGAguuugcuggaACGcUCGAUGUGg -3'
miRNA:   3'- aGCU--AACCGGCCUg---------UGCcAGCUGCAC- -5'
23380 5' -55.8 NC_005259.1 + 26442 0.66 0.755991
Target:  5'- cCGAgcGGgCGGGC-CGGUgggcCGAUGUGg -3'
miRNA:   3'- aGCUaaCCgGCCUGuGCCA----GCUGCAC- -5'
23380 5' -55.8 NC_005259.1 + 49038 0.67 0.744948
Target:  5'- gUCGAgucGGCaCGGACgaugacgugaucgGCGGUUGGCGc- -3'
miRNA:   3'- -AGCUaa-CCG-GCCUG-------------UGCCAGCUGCac -5'
23380 5' -55.8 NC_005259.1 + 45619 0.68 0.673272
Target:  5'- cUCGAUgcccgccgGGCCGGGCAgcgcgcCGGUgcCGcCGUGa -3'
miRNA:   3'- -AGCUAa-------CCGGCCUGU------GCCA--GCuGCAC- -5'
23380 5' -55.8 NC_005259.1 + 4990 0.68 0.652025
Target:  5'- cCGA-UGGCCGGGCACuacggcaagguGGUCGAg--- -3'
miRNA:   3'- aGCUaACCGGCCUGUG-----------CCAGCUgcac -5'
23380 5' -55.8 NC_005259.1 + 35658 0.7 0.56706
Target:  5'- gCGAgggUGGCCa-GCGCGGUgGugGUGc -3'
miRNA:   3'- aGCUa--ACCGGccUGUGCCAgCugCAC- -5'
23380 5' -55.8 NC_005259.1 + 26810 0.7 0.556581
Target:  5'- cCGGUUGGCCGGuAC-CGG-CgGugGUGc -3'
miRNA:   3'- aGCUAACCGGCC-UGuGCCaG-CugCAC- -5'
23380 5' -55.8 NC_005259.1 + 58567 0.7 0.556581
Target:  5'- gCGGUUgGGCCGGAuCGCGGcgCGGCu-- -3'
miRNA:   3'- aGCUAA-CCGGCCU-GUGCCa-GCUGcac -5'
23380 5' -55.8 NC_005259.1 + 40462 0.7 0.514278
Target:  5'- gUGGUUGacguacuGCCGGGCcgcGCGGUUGACGUu -3'
miRNA:   3'- aGCUAAC-------CGGCCUG---UGCCAGCUGCAc -5'
23380 5' -55.8 NC_005259.1 + 16785 0.66 0.794836
Target:  5'- cUCGug-GGUC-GACGCGGUCG-CGUa -3'
miRNA:   3'- -AGCuaaCCGGcCUGUGCCAGCuGCAc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.