miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 3' -55.4 NC_005259.1 + 9891 0.69 0.571688
Target:  5'- uUCCUCGcGCGCGacgagcuUUCGGCCC--UCGCg -3'
miRNA:   3'- uAGGAGC-UGCGC-------AAGCUGGGcuAGUG- -5'
23383 3' -55.4 NC_005259.1 + 13130 0.67 0.691113
Target:  5'- -aCCagCGcACgGUGUUCGGCUCGAUCAUg -3'
miRNA:   3'- uaGGa-GC-UG-CGCAAGCUGGGCUAGUG- -5'
23383 3' -55.4 NC_005259.1 + 17027 0.67 0.7332
Target:  5'- cAUCCUCGGCGCuGgcaUCGAcaaccgcgacCCCGAggcggugCGCg -3'
miRNA:   3'- -UAGGAGCUGCG-Ca--AGCU----------GGGCUa------GUG- -5'
23383 3' -55.4 NC_005259.1 + 18284 0.67 0.732164
Target:  5'- -aCCUCGACGCccgacgagccgccGUUCuGCCCGGUgUGCg -3'
miRNA:   3'- uaGGAGCUGCG-------------CAAGcUGGGCUA-GUG- -5'
23383 3' -55.4 NC_005259.1 + 18971 0.69 0.58345
Target:  5'- -aCCUCGcCGCGUacaUCG-CCCGG-CACg -3'
miRNA:   3'- uaGGAGCuGCGCA---AGCuGGGCUaGUG- -5'
23383 3' -55.4 NC_005259.1 + 20395 0.67 0.69856
Target:  5'- -gCCUCGACGUagcaagggcaucgaGgUCuACCCGGUCACc -3'
miRNA:   3'- uaGGAGCUGCG--------------CaAGcUGGGCUAGUG- -5'
23383 3' -55.4 NC_005259.1 + 22633 0.66 0.7537
Target:  5'- cAUCUUCGcCGCGUcggUCGACgCCGccCACc -3'
miRNA:   3'- -UAGGAGCuGCGCA---AGCUG-GGCuaGUG- -5'
23383 3' -55.4 NC_005259.1 + 26292 0.72 0.446105
Target:  5'- -cCCUCGACGgGUacggggaUCGACCCauacauauccucggGGUCGCa -3'
miRNA:   3'- uaGGAGCUGCgCA-------AGCUGGG--------------CUAGUG- -5'
23383 3' -55.4 NC_005259.1 + 29057 0.7 0.520126
Target:  5'- -gCCgCGAgCGCGguaUCGGCCCGAUCuGCg -3'
miRNA:   3'- uaGGaGCU-GCGCa--AGCUGGGCUAG-UG- -5'
23383 3' -55.4 NC_005259.1 + 29229 0.72 0.44996
Target:  5'- -gCCUCGGCGCGUU---CCUGAUCAUc -3'
miRNA:   3'- uaGGAGCUGCGCAAgcuGGGCUAGUG- -5'
23383 3' -55.4 NC_005259.1 + 29925 0.82 0.108965
Target:  5'- -aCCaUCGACGCGUggccgccacgCGGCCCGGUCGCg -3'
miRNA:   3'- uaGG-AGCUGCGCAa---------GCUGGGCUAGUG- -5'
23383 3' -55.4 NC_005259.1 + 31018 0.68 0.669698
Target:  5'- uGUCCaC-ACGUGaUCGugCCGAUCACc -3'
miRNA:   3'- -UAGGaGcUGCGCaAGCugGGCUAGUG- -5'
23383 3' -55.4 NC_005259.1 + 32869 0.68 0.680427
Target:  5'- -aCCUCGACGCGcgCGGugaUCGAUuCACc -3'
miRNA:   3'- uaGGAGCUGCGCaaGCUg--GGCUA-GUG- -5'
23383 3' -55.4 NC_005259.1 + 34383 0.67 0.722797
Target:  5'- -aCCUCGACGCGcaacugcugcUCGACCgGGcugUCAUu -3'
miRNA:   3'- uaGGAGCUGCGCa---------AGCUGGgCU---AGUG- -5'
23383 3' -55.4 NC_005259.1 + 39550 0.67 0.722797
Target:  5'- -aCCUCGACGUugagccggucGUcCGGCCCGAccUCGa -3'
miRNA:   3'- uaGGAGCUGCG----------CAaGCUGGGCU--AGUg -5'
23383 3' -55.4 NC_005259.1 + 42054 0.66 0.763777
Target:  5'- uGUCCUCGGgGUGggCGGCuaGGuaUCGCa -3'
miRNA:   3'- -UAGGAGCUgCGCaaGCUGggCU--AGUG- -5'
23383 3' -55.4 NC_005259.1 + 46670 0.66 0.783528
Target:  5'- gGUUCUCGGCGaGcUCGGCCUGAgcCGCc -3'
miRNA:   3'- -UAGGAGCUGCgCaAGCUGGGCUa-GUG- -5'
23383 3' -55.4 NC_005259.1 + 48493 0.67 0.710201
Target:  5'- uUCCUCGACGCGcuugagggccgCGACuuGccgCACu -3'
miRNA:   3'- uAGGAGCUGCGCaa---------GCUGggCua-GUG- -5'
23383 3' -55.4 NC_005259.1 + 50526 0.69 0.615737
Target:  5'- -aCCUCGACGCGcUCGcCUCGggCGa -3'
miRNA:   3'- uaGGAGCUGCGCaAGCuGGGCuaGUg -5'
23383 3' -55.4 NC_005259.1 + 51517 0.67 0.7332
Target:  5'- -aUCUCGACGCGcgUGACCUcGUgCACg -3'
miRNA:   3'- uaGGAGCUGCGCaaGCUGGGcUA-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.