miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 31799 0.74 0.233375
Target:  5'- -cGCGucgucauCGAGcucgacCGACCCCACCGCGCc -3'
miRNA:   3'- gaUGCu------GCUCac----GCUGGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 31248 0.75 0.200604
Target:  5'- -cGCGGCG-GUGCcGCCCCACaCGcCGCa -3'
miRNA:   3'- gaUGCUGCuCACGcUGGGGUG-GC-GCG- -5'
23383 5' -58.1 NC_005259.1 + 18959 0.76 0.185769
Target:  5'- -gAgGAUGGG-GUGACCUCGCCGCGUa -3'
miRNA:   3'- gaUgCUGCUCaCGCUGGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 35216 0.77 0.154872
Target:  5'- -gGCGGCGAGgaacGUGACCgCCACgCGUGCa -3'
miRNA:   3'- gaUGCUGCUCa---CGCUGG-GGUG-GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 2261 0.79 0.122011
Target:  5'- -gGCGACGAGUuCGACaUCACCGCGCc -3'
miRNA:   3'- gaUGCUGCUCAcGCUGgGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 48058 0.71 0.367002
Target:  5'- -cACGGCGGGUaGCG---CCGCCGCGCc -3'
miRNA:   3'- gaUGCUGCUCA-CGCuggGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 47950 0.71 0.367002
Target:  5'- -gACGGCG-GUGcCGAUggCCGCCGCGCc -3'
miRNA:   3'- gaUGCUGCuCAC-GCUGg-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 53687 0.69 0.469165
Target:  5'- -cGCGAUG-GUGCGACCggUcaacgugaacgugguCACCGCGCc -3'
miRNA:   3'- gaUGCUGCuCACGCUGG--G---------------GUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 21534 0.69 0.465332
Target:  5'- -aGCGGCGAGgacUGcCGACUCagagACCGCGUa -3'
miRNA:   3'- gaUGCUGCUC---AC-GCUGGGg---UGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 43917 0.69 0.465332
Target:  5'- --uCGAUGGGcaGCGACgaCACCGCGCu -3'
miRNA:   3'- gauGCUGCUCa-CGCUGggGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 7182 0.69 0.454876
Target:  5'- --cCGGCGAGUGCccGGCCUgcggacgCACCGgGCu -3'
miRNA:   3'- gauGCUGCUCACG--CUGGG-------GUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 13786 0.7 0.446416
Target:  5'- -gGCGACGAgcagugGUGCGACaUCACCG-GCg -3'
miRNA:   3'- gaUGCUGCU------CACGCUGgGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 45333 0.7 0.446416
Target:  5'- aCUGCGugGccUGCGccGCCugggCCGCCGCGUa -3'
miRNA:   3'- -GAUGCugCucACGC--UGG----GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 31743 0.7 0.446416
Target:  5'- cCUGCcGCGAGcgcugGUGuCCCCACCGCc- -3'
miRNA:   3'- -GAUGcUGCUCa----CGCuGGGGUGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 28143 0.7 0.437121
Target:  5'- -gGCGAUGAGcUGCccGGCCUCGaCGCGCu -3'
miRNA:   3'- gaUGCUGCUC-ACG--CUGGGGUgGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 35620 0.7 0.409918
Target:  5'- gCUGCGuCGAGUaGUucgGGCCgCCGCCGCuGCc -3'
miRNA:   3'- -GAUGCuGCUCA-CG---CUGG-GGUGGCG-CG- -5'
23383 5' -58.1 NC_005259.1 + 60250 0.7 0.401087
Target:  5'- uUGCGuGCGGGUGCaaGGCUggCCACCaGCGCu -3'
miRNA:   3'- gAUGC-UGCUCACG--CUGG--GGUGG-CGCG- -5'
23383 5' -58.1 NC_005259.1 + 57861 0.71 0.383793
Target:  5'- -cACGACG-GUGCGACaCCCucgaugugGCgGUGCg -3'
miRNA:   3'- gaUGCUGCuCACGCUG-GGG--------UGgCGCG- -5'
23383 5' -58.1 NC_005259.1 + 44873 0.71 0.383793
Target:  5'- -gGCGGCGAGauccgacGCG-CCCCAcgaguauuuuCCGCGCu -3'
miRNA:   3'- gaUGCUGCUCa------CGCuGGGGU----------GGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 13338 0.71 0.383793
Target:  5'- -cACGGCGGGacCG-CCCCGCCGCa- -3'
miRNA:   3'- gaUGCUGCUCacGCuGGGGUGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.