Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 28049 | 0.66 | 0.63851 |
Target: 5'- gCUugGGauCGAucUGCGACCCCuGCCGC-Ca -3' miRNA: 3'- -GAugCU--GCUc-ACGCUGGGG-UGGCGcG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 61034 | 0.66 | 0.678316 |
Target: 5'- -gGCGGCGAGgucgaccgacggGCGGCUCaccuuguGCCGgGCa -3' miRNA: 3'- gaUGCUGCUCa-----------CGCUGGGg------UGGCgCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 33905 | 0.66 | 0.669966 |
Target: 5'- -cGCGACGGGccgaGACCggCCACgGUGCg -3' miRNA: 3'- gaUGCUGCUCacg-CUGG--GGUGgCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 30010 | 0.66 | 0.669966 |
Target: 5'- -cACGACaAG-GUGACCaCCGCCGgGg -3' miRNA: 3'- gaUGCUGcUCaCGCUGG-GGUGGCgCg -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 8540 | 0.66 | 0.669966 |
Target: 5'- -gGCGAUGAGcucgGCGguguaGCCCaugCGCCGCaGCa -3' miRNA: 3'- gaUGCUGCUCa---CGC-----UGGG---GUGGCG-CG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 20697 | 0.66 | 0.669966 |
Target: 5'- -cACG-CGcucGGUGguCGAagguuucaCCCCGCCGCGCg -3' miRNA: 3'- gaUGCuGC---UCAC--GCU--------GGGGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 46365 | 0.66 | 0.649012 |
Target: 5'- -cGCGAUGGcaccgccCGGCCCCaucucacgcaGCCGCGCg -3' miRNA: 3'- gaUGCUGCUcac----GCUGGGG----------UGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 41674 | 0.66 | 0.649012 |
Target: 5'- uCUGCacCGcGUGCGuggCCACCGCGCa -3' miRNA: 3'- -GAUGcuGCuCACGCuggGGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 21001 | 0.66 | 0.63851 |
Target: 5'- cCUACu-CGGGcgGCGACCCUgACCG-GCa -3' miRNA: 3'- -GAUGcuGCUCa-CGCUGGGG-UGGCgCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 14159 | 0.66 | 0.63851 |
Target: 5'- -cGCGuCGuGUG-GAUCUCGCCGgGCg -3' miRNA: 3'- gaUGCuGCuCACgCUGGGGUGGCgCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 64614 | 0.68 | 0.534524 |
Target: 5'- -gACGGCGAGcGCGACgggcagcagcgCCCACCaaucgaGCGUc -3' miRNA: 3'- gaUGCUGCUCaCGCUG-----------GGGUGG------CGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 19088 | 0.66 | 0.63851 |
Target: 5'- gCUACGACaAGcUGCGcgaaCUCACCgGCGCu -3' miRNA: 3'- -GAUGCUGcUC-ACGCug--GGGUGG-CGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 29119 | 0.66 | 0.637459 |
Target: 5'- cCUGCuGGUGAGcGCGGCgguauucgccucgCUCACCGCGCu -3' miRNA: 3'- -GAUG-CUGCUCaCGCUG-------------GGGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 46309 | 0.66 | 0.628002 |
Target: 5'- gCUGCGuuGuucGCGGCCCCGagggucgcgUCGCGCa -3' miRNA: 3'- -GAUGCugCucaCGCUGGGGU---------GGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 36707 | 0.67 | 0.617497 |
Target: 5'- --cCGAUGAgcucGUGCcGCucgaCCCGCCGCGCc -3' miRNA: 3'- gauGCUGCU----CACGcUG----GGGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 4409 | 0.67 | 0.617497 |
Target: 5'- -aACuACGAG---GGCCgCCACCGCGCg -3' miRNA: 3'- gaUGcUGCUCacgCUGG-GGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 41242 | 0.67 | 0.607004 |
Target: 5'- --gUGACGAuccgGUGCG-CCUCACCGCc- -3' miRNA: 3'- gauGCUGCU----CACGCuGGGGUGGCGcg -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 11117 | 0.67 | 0.607004 |
Target: 5'- gUGCGACGgugacGGUGCGAgCCguCGCCuGCGg -3' miRNA: 3'- gAUGCUGC-----UCACGCUgGG--GUGG-CGCg -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 46673 | 0.67 | 0.607004 |
Target: 5'- uCU-CGGCGAGcucgGCcugaGCCgCCGCCGCGUc -3' miRNA: 3'- -GAuGCUGCUCa---CGc---UGG-GGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 4310 | 0.72 | 0.32728 |
Target: 5'- cCUGCGAUGAGcGCGACCaaCC-UCGUGCc -3' miRNA: 3'- -GAUGCUGCUCaCGCUGG--GGuGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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