miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 4310 0.72 0.32728
Target:  5'- cCUGCGAUGAGcGCGACCaaCC-UCGUGCc -3'
miRNA:   3'- -GAUGCUGCUCaCGCUGG--GGuGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 61034 0.66 0.678316
Target:  5'- -gGCGGCGAGgucgaccgacggGCGGCUCaccuuguGCCGgGCa -3'
miRNA:   3'- gaUGCUGCUCa-----------CGCUGGGg------UGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 60250 0.7 0.401087
Target:  5'- uUGCGuGCGGGUGCaaGGCUggCCACCaGCGCu -3'
miRNA:   3'- gAUGC-UGCUCACG--CUGG--GGUGG-CGCG- -5'
23383 5' -58.1 NC_005259.1 + 57861 0.71 0.383793
Target:  5'- -cACGACG-GUGCGACaCCCucgaugugGCgGUGCg -3'
miRNA:   3'- gaUGCUGCuCACGCUG-GGG--------UGgCGCG- -5'
23383 5' -58.1 NC_005259.1 + 44873 0.71 0.383793
Target:  5'- -gGCGGCGAGauccgacGCG-CCCCAcgaguauuuuCCGCGCu -3'
miRNA:   3'- gaUGCUGCUCa------CGCuGGGGU----------GGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 13338 0.71 0.383793
Target:  5'- -cACGGCGGGacCG-CCCCGCCGCa- -3'
miRNA:   3'- gaUGCUGCUCacGCuGGGGUGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 47950 0.71 0.367002
Target:  5'- -gACGGCG-GUGcCGAUggCCGCCGCGCc -3'
miRNA:   3'- gaUGCUGCuCAC-GCUGg-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 48058 0.71 0.367002
Target:  5'- -cACGGCGGGUaGCG---CCGCCGCGCc -3'
miRNA:   3'- gaUGCUGCUCA-CGCuggGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 35319 0.71 0.367002
Target:  5'- -gGCGGUGuGUacGCGACCCCGCguaGCGCg -3'
miRNA:   3'- gaUGCUGCuCA--CGCUGGGGUGg--CGCG- -5'
23383 5' -58.1 NC_005259.1 + 6245 0.71 0.350723
Target:  5'- ---gGGCGAGUGgGucgauaucccgcACCgCCGCCGCGCc -3'
miRNA:   3'- gaugCUGCUCACgC------------UGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 42470 0.72 0.334964
Target:  5'- aCUACGGCGAGgccCGGCCCguagaGCCGUGa -3'
miRNA:   3'- -GAUGCUGCUCac-GCUGGGg----UGGCGCg -5'
23383 5' -58.1 NC_005259.1 + 33397 0.81 0.088223
Target:  5'- -cGCGACGAGc-CGugUCCACCGCGCg -3'
miRNA:   3'- gaUGCUGCUCacGCugGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 37188 0.72 0.319728
Target:  5'- -gAgGACGAGcUGCGGCCCUugC-CGCc -3'
miRNA:   3'- gaUgCUGCUC-ACGCUGGGGugGcGCG- -5'
23383 5' -58.1 NC_005259.1 + 48441 0.72 0.31898
Target:  5'- -gGCG-CGAGgcaGCGGCagcgcguUCCACCGCGCg -3'
miRNA:   3'- gaUGCuGCUCa--CGCUG-------GGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 24662 0.74 0.264024
Target:  5'- -gACGACGAGcGCGACCCguUCGC-Ca -3'
miRNA:   3'- gaUGCUGCUCaCGCUGGGguGGCGcG- -5'
23383 5' -58.1 NC_005259.1 + 66251 0.74 0.257643
Target:  5'- --uCGACGcAGcGCGGCCCgCGCCGgGCg -3'
miRNA:   3'- gauGCUGC-UCaCGCUGGG-GUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 31799 0.74 0.233375
Target:  5'- -cGCGucgucauCGAGcucgacCGACCCCACCGCGCc -3'
miRNA:   3'- gaUGCu------GCUCac----GCUGGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 31248 0.75 0.200604
Target:  5'- -cGCGGCG-GUGCcGCCCCACaCGcCGCa -3'
miRNA:   3'- gaUGCUGCuCACGcUGGGGUG-GC-GCG- -5'
23383 5' -58.1 NC_005259.1 + 18959 0.76 0.185769
Target:  5'- -gAgGAUGGG-GUGACCUCGCCGCGUa -3'
miRNA:   3'- gaUgCUGCUCaCGCUGGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 35216 0.77 0.154872
Target:  5'- -gGCGGCGAGgaacGUGACCgCCACgCGUGCa -3'
miRNA:   3'- gaUGCUGCUCa---CGCUGG-GGUG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.