miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 747 0.69 0.49446
Target:  5'- cCUACGcCGccGGUGCcuACCgcguCCACCGCGCc -3'
miRNA:   3'- -GAUGCuGC--UCACGc-UGG----GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 2261 0.79 0.122011
Target:  5'- -gGCGACGAGUuCGACaUCACCGCGCc -3'
miRNA:   3'- gaUGCUGCUCAcGCUGgGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 2514 0.67 0.575675
Target:  5'- -aGC-ACGAGacccaaGcCGACgCCACCGCGCg -3'
miRNA:   3'- gaUGcUGCUCa-----C-GCUGgGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 3100 0.68 0.554988
Target:  5'- -aGCGAUGAGcggGCGGCCaUugCGCGg -3'
miRNA:   3'- gaUGCUGCUCa--CGCUGGgGugGCGCg -5'
23383 5' -58.1 NC_005259.1 + 4310 0.72 0.32728
Target:  5'- cCUGCGAUGAGcGCGACCaaCC-UCGUGCc -3'
miRNA:   3'- -GAUGCUGCUCaCGCUGG--GGuGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 4409 0.67 0.617497
Target:  5'- -aACuACGAG---GGCCgCCACCGCGCg -3'
miRNA:   3'- gaUGcUGCUCacgCUGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 4482 0.67 0.575675
Target:  5'- --uCGGCGGuGgaccaugGUGAUCgCCACCGCGCc -3'
miRNA:   3'- gauGCUGCU-Ca------CGCUGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 5003 0.68 0.543702
Target:  5'- aCUACGGCaaGGUGgucgagaucgaucCGGCCCCACacgacaGCGCc -3'
miRNA:   3'- -GAUGCUGc-UCAC-------------GCUGGGGUGg-----CGCG- -5'
23383 5' -58.1 NC_005259.1 + 5557 0.68 0.534524
Target:  5'- -cGCGugGGGUGgugacggcgaGACCgUGCCGUGCu -3'
miRNA:   3'- gaUGCugCUCACg---------CUGGgGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 5646 0.68 0.554988
Target:  5'- --cCGGCGAGgacgGCGGgCgCUACaCGCGCg -3'
miRNA:   3'- gauGCUGCUCa---CGCUgG-GGUG-GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 6245 0.71 0.350723
Target:  5'- ---gGGCGAGUGgGucgauaucccgcACCgCCGCCGCGCc -3'
miRNA:   3'- gaugCUGCUCACgC------------UGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 7182 0.69 0.454876
Target:  5'- --cCGGCGAGUGCccGGCCUgcggacgCACCGgGCu -3'
miRNA:   3'- gauGCUGCUCACG--CUGGG-------GUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 8540 0.66 0.669966
Target:  5'- -gGCGAUGAGcucgGCGguguaGCCCaugCGCCGCaGCa -3'
miRNA:   3'- gaUGCUGCUCa---CGC-----UGGG---GUGGCG-CG- -5'
23383 5' -58.1 NC_005259.1 + 8843 0.67 0.596531
Target:  5'- gCUGCGcCGAccaccacaGCGugCCCGCCGCcuGCc -3'
miRNA:   3'- -GAUGCuGCUca------CGCugGGGUGGCG--CG- -5'
23383 5' -58.1 NC_005259.1 + 9277 0.68 0.554988
Target:  5'- -aACGGCGAGUuauGCGGUgCCGCCaCGCu -3'
miRNA:   3'- gaUGCUGCUCA---CGCUGgGGUGGcGCG- -5'
23383 5' -58.1 NC_005259.1 + 9900 0.68 0.524392
Target:  5'- -cGCGACGAGcuuuCGGCCCU--CGCGCu -3'
miRNA:   3'- gaUGCUGCUCac--GCUGGGGugGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 11117 0.67 0.607004
Target:  5'- gUGCGACGgugacGGUGCGAgCCguCGCCuGCGg -3'
miRNA:   3'- gAUGCUGC-----UCACGCUgGG--GUGG-CGCg -5'
23383 5' -58.1 NC_005259.1 + 13338 0.71 0.383793
Target:  5'- -cACGGCGGGacCG-CCCCGCCGCa- -3'
miRNA:   3'- gaUGCUGCUCacGCuGGGGUGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 13462 0.68 0.554988
Target:  5'- -cGCGGCGc-UG-GugCUCACCGCGCu -3'
miRNA:   3'- gaUGCUGCucACgCugGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 13786 0.7 0.446416
Target:  5'- -gGCGACGAgcagugGUGCGACaUCACCG-GCg -3'
miRNA:   3'- gaUGCUGCU------CACGCUGgGGUGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.