miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 33905 0.66 0.669966
Target:  5'- -cGCGACGGGccgaGACCggCCACgGUGCg -3'
miRNA:   3'- gaUGCUGCUCacg-CUGG--GGUGgCGCG- -5'
23383 5' -58.1 NC_005259.1 + 28049 0.66 0.63851
Target:  5'- gCUugGGauCGAucUGCGACCCCuGCCGC-Ca -3'
miRNA:   3'- -GAugCU--GCUc-ACGCUGGGG-UGGCGcG- -5'
23383 5' -58.1 NC_005259.1 + 30010 0.66 0.669966
Target:  5'- -cACGACaAG-GUGACCaCCGCCGgGg -3'
miRNA:   3'- gaUGCUGcUCaCGCUGG-GGUGGCgCg -5'
23383 5' -58.1 NC_005259.1 + 21001 0.66 0.63851
Target:  5'- cCUACu-CGGGcgGCGACCCUgACCG-GCa -3'
miRNA:   3'- -GAUGcuGCUCa-CGCUGGGG-UGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 46365 0.66 0.649012
Target:  5'- -cGCGAUGGcaccgccCGGCCCCaucucacgcaGCCGCGCg -3'
miRNA:   3'- gaUGCUGCUcac----GCUGGGG----------UGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 61034 0.66 0.678316
Target:  5'- -gGCGGCGAGgucgaccgacggGCGGCUCaccuuguGCCGgGCa -3'
miRNA:   3'- gaUGCUGCUCa-----------CGCUGGGg------UGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 19088 0.66 0.63851
Target:  5'- gCUACGACaAGcUGCGcgaaCUCACCgGCGCu -3'
miRNA:   3'- -GAUGCUGcUC-ACGCug--GGGUGG-CGCG- -5'
23383 5' -58.1 NC_005259.1 + 14159 0.66 0.63851
Target:  5'- -cGCGuCGuGUG-GAUCUCGCCGgGCg -3'
miRNA:   3'- gaUGCuGCuCACgCUGGGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 20697 0.66 0.669966
Target:  5'- -cACG-CGcucGGUGguCGAagguuucaCCCCGCCGCGCg -3'
miRNA:   3'- gaUGCuGC---UCAC--GCU--------GGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 8540 0.66 0.669966
Target:  5'- -gGCGAUGAGcucgGCGguguaGCCCaugCGCCGCaGCa -3'
miRNA:   3'- gaUGCUGCUCa---CGC-----UGGG---GUGGCG-CG- -5'
23383 5' -58.1 NC_005259.1 + 41674 0.66 0.649012
Target:  5'- uCUGCacCGcGUGCGuggCCACCGCGCa -3'
miRNA:   3'- -GAUGcuGCuCACGCuggGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 46309 0.66 0.628002
Target:  5'- gCUGCGuuGuucGCGGCCCCGagggucgcgUCGCGCa -3'
miRNA:   3'- -GAUGCugCucaCGCUGGGGU---------GGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 29119 0.66 0.637459
Target:  5'- cCUGCuGGUGAGcGCGGCgguauucgccucgCUCACCGCGCu -3'
miRNA:   3'- -GAUG-CUGCUCaCGCUG-------------GGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 4409 0.67 0.617497
Target:  5'- -aACuACGAG---GGCCgCCACCGCGCg -3'
miRNA:   3'- gaUGcUGCUCacgCUGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 24255 0.67 0.575675
Target:  5'- --uCGGCGAGUGCGugCa---CGCGUg -3'
miRNA:   3'- gauGCUGCUCACGCugGggugGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 2514 0.67 0.575675
Target:  5'- -aGC-ACGAGacccaaGcCGACgCCACCGCGCg -3'
miRNA:   3'- gaUGcUGCUCa-----C-GCUGgGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 17175 0.67 0.575675
Target:  5'- -gACGACaAG-GCGGCgCaggaaGCCGCGCg -3'
miRNA:   3'- gaUGCUGcUCaCGCUGgGg----UGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 34693 0.67 0.575675
Target:  5'- gCUGCgGAUGA-UGcCGACCauCUGCCGCGCg -3'
miRNA:   3'- -GAUG-CUGCUcAC-GCUGG--GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 37754 0.67 0.565307
Target:  5'- -gAUGACcAGcgcgGUGGCCCCugCGgGCa -3'
miRNA:   3'- gaUGCUGcUCa---CGCUGGGGugGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 41242 0.67 0.607004
Target:  5'- --gUGACGAuccgGUGCG-CCUCACCGCc- -3'
miRNA:   3'- gauGCUGCU----CACGCuGGGGUGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.