miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 58386 0.67 0.575675
Target:  5'- gCUcCGACG-GUGCGcACCagCCACCG-GCg -3'
miRNA:   3'- -GAuGCUGCuCACGC-UGG--GGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 8843 0.67 0.596531
Target:  5'- gCUGCGcCGAccaccacaGCGugCCCGCCGCcuGCc -3'
miRNA:   3'- -GAUGCuGCUca------CGCugGGGUGGCG--CG- -5'
23383 5' -58.1 NC_005259.1 + 22096 0.67 0.592349
Target:  5'- -gAUGGCGGGcaccauuuucgagGuCGACCCCucgaucCCGCGCa -3'
miRNA:   3'- gaUGCUGCUCa------------C-GCUGGGGu-----GGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 46673 0.67 0.607004
Target:  5'- uCU-CGGCGAGcucgGCcugaGCCgCCGCCGCGUc -3'
miRNA:   3'- -GAuGCUGCUCa---CGc---UGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 11117 0.67 0.607004
Target:  5'- gUGCGACGgugacGGUGCGAgCCguCGCCuGCGg -3'
miRNA:   3'- gAUGCUGC-----UCACGCUgGG--GUGG-CGCg -5'
23383 5' -58.1 NC_005259.1 + 41242 0.67 0.607004
Target:  5'- --gUGACGAuccgGUGCG-CCUCACCGCc- -3'
miRNA:   3'- gauGCUGCU----CACGCuGGGGUGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 4409 0.67 0.617497
Target:  5'- -aACuACGAG---GGCCgCCACCGCGCg -3'
miRNA:   3'- gaUGcUGCUCacgCUGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 36707 0.67 0.617497
Target:  5'- --cCGAUGAgcucGUGCcGCucgaCCCGCCGCGCc -3'
miRNA:   3'- gauGCUGCU----CACGcUG----GGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 21971 0.68 0.534524
Target:  5'- -cGCGugG-GUGuCGuucuCCCCACCG-GCa -3'
miRNA:   3'- gaUGCugCuCAC-GCu---GGGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 5003 0.68 0.543702
Target:  5'- aCUACGGCaaGGUGgucgagaucgaucCGGCCCCACacgacaGCGCc -3'
miRNA:   3'- -GAUGCUGc-UCAC-------------GCUGGGGUGg-----CGCG- -5'
23383 5' -58.1 NC_005259.1 + 66001 0.68 0.544725
Target:  5'- gCU-CGACGuGGUGCGcACCCUcgggGCCGCa- -3'
miRNA:   3'- -GAuGCUGC-UCACGC-UGGGG----UGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 5646 0.68 0.554988
Target:  5'- --cCGGCGAGgacgGCGGgCgCUACaCGCGCg -3'
miRNA:   3'- gauGCUGCUCa---CGCUgG-GGUG-GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 13462 0.68 0.554988
Target:  5'- -cGCGGCGc-UG-GugCUCACCGCGCu -3'
miRNA:   3'- gaUGCUGCucACgCugGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 49648 0.68 0.554988
Target:  5'- --uCGGCGAugGCGGCCUCGauaCGCGCc -3'
miRNA:   3'- gauGCUGCUcaCGCUGGGGUg--GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 3100 0.68 0.554988
Target:  5'- -aGCGAUGAGcggGCGGCCaUugCGCGg -3'
miRNA:   3'- gaUGCUGCUCa--CGCUGGgGugGCGCg -5'
23383 5' -58.1 NC_005259.1 + 9277 0.68 0.554988
Target:  5'- -aACGGCGAGUuauGCGGUgCCGCCaCGCu -3'
miRNA:   3'- gaUGCUGCUCA---CGCUGgGGUGGcGCG- -5'
23383 5' -58.1 NC_005259.1 + 41114 0.68 0.554988
Target:  5'- gUAUGACGAuGUcgGCgGugCCCGCguCGCGCa -3'
miRNA:   3'- gAUGCUGCU-CA--CG-CugGGGUG--GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 46149 0.68 0.554988
Target:  5'- -aGCGACGAGcaUGuCGAauaccgcuugCCCGCCGgGCg -3'
miRNA:   3'- gaUGCUGCUC--AC-GCUg---------GGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 64614 0.68 0.534524
Target:  5'- -gACGGCGAGcGCGACgggcagcagcgCCCACCaaucgaGCGUc -3'
miRNA:   3'- gaUGCUGCUCaCGCUG-----------GGGUGG------CGCG- -5'
23383 5' -58.1 NC_005259.1 + 5557 0.68 0.534524
Target:  5'- -cGCGugGGGUGgugacggcgaGACCgUGCCGUGCu -3'
miRNA:   3'- gaUGCugCUCACg---------CUGGgGUGGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.